Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.7e-95 351.3 189 100.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 2.0e-69 266.2 189 78.8
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.7e-68 263.1 189 77.2
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 9.2e-67 257.3 190 77.4
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 3.5e-66 255.4 169 79.9
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 6.2e-55 218.0 161 74.5
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.4e-43 180.3 95 92.6
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.8e-36 155.6 191 53.4
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.4e-35 152.9 191 52.4
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 3.2e-35 152.5 192 50.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 4.2e-35 152.1 192 50.0
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 4.2e-35 152.1 192 49.5
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 4.2e-35 152.1 192 50.0
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 4.2e-35 152.1 192 50.0
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 9.3e-35 151.0 192 50.0
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.6e-34 150.2 193 50.8
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.7e-33 146.7 195 49.7
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.0e-33 146.0 196 50.0
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-33 145.6 189 48.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.1e-32 144.1 194 47.9
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.3e-32 141.4 188 48.9
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-31 140.6 189 47.6
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.6e-31 140.2 192 50.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.1e-31 139.8 194 49.5
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.1e-31 139.8 193 47.7
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.6e-31 139.0 190 48.4
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 6.2e-31 138.3 196 46.9
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.1e-30 137.5 209 46.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.4e-30 137.1 189 46.6
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.4e-30 137.1 186 46.2
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 3.1e-30 136.0 192 45.8
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 3.1e-30 136.0 191 47.6
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.1e-30 136.0 191 48.7
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 4.0e-30 135.6 191 48.2
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 5.3e-30 135.2 189 46.6
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 9.0e-30 134.4 189 47.1
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 9.0e-30 134.4 194 47.9
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 9.0e-30 134.4 186 47.3
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-29 133.3 183 46.4
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.0e-29 133.3 191 45.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.4e-29 132.5 198 48.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 4.5e-29 132.1 196 46.4
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 4.5e-29 132.1 193 47.7
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 7.6e-29 131.3 200 44.5
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 7.6e-29 131.3 192 47.4
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 2.2e-28 129.8 192 45.3
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.2e-28 129.8 195 46.7
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 2.2e-28 129.8 197 46.2
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.8e-28 129.0 198 45.5
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 3.8e-28 129.0 199 44.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 4.9e-28 128.6 192 44.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 6.4e-28 128.3 191 44.5
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 8.4e-28 127.9 202 42.6
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 8.4e-28 127.9 195 44.6
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 8.4e-28 127.9 187 44.9
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.4e-27 127.1 204 41.7
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.4e-27 127.1 202 44.6
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.4e-27 126.3 178 47.2
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.2e-27 125.9 194 45.4
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.2e-27 125.9 198 43.9
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 5.4e-27 125.2 199 41.7
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 7.1e-27 124.8 192 44.8
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 7.1e-27 124.8 192 44.8
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 9.3e-27 124.4 180 48.9
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.2e-26 124.0 199 44.2
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-26 123.6 192 44.8
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-26 123.6 190 47.9
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.5e-26 122.5 193 45.1
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 4.6e-26 122.1 199 44.2
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 7.9e-26 121.3 191 45.0
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 7.9e-26 121.3 184 43.5
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.3e-25 120.6 195 44.6
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.3e-25 120.6 193 43.0
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.8e-25 120.2 197 44.7
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.8e-25 120.2 191 44.0
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.8e-25 120.2 191 44.5
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.3e-25 119.8 173 44.5
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 5.1e-25 118.6 187 45.5
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 6.7e-25 118.2 197 41.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-24 117.5 191 43.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.9e-24 116.7 192 45.8
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.5e-24 116.3 183 42.1
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 9.6e-24 114.4 190 44.2
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.1e-23 113.2 190 43.7
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 2.1e-23 113.2 215 36.7
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.8e-23 112.8 191 44.5
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.8e-23 112.8 195 40.5
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 3.7e-23 112.5 200 43.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.8e-23 112.1 191 44.5
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.8e-23 112.1 193 38.9
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.2e-23 111.7 193 38.9
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 8.1e-23 111.3 184 40.2
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.1e-22 110.9 197 38.1
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.8e-22 110.2 188 44.1
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 4.0e-22 109.0 190 40.0
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 4.0e-22 109.0 199 41.2
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 5.3e-22 108.6 184 44.6
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 6.9e-22 108.2 200 42.5
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 9.0e-22 107.8 168 41.7
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.5e-21 107.1 190 42.6
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.5e-21 107.1 200 40.0
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.0e-21 106.7 190 43.2
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 3.4e-21 105.9 188 42.6
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.5e-21 105.5 185 42.7
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.5e-21 105.5 185 42.7
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.8e-21 105.1 185 42.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 5.8e-21 105.1 199 41.7
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 9.9e-21 104.4 169 41.4
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.3e-20 104.0 207 36.7
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.3e-20 104.0 73 71.2
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-20 104.0 185 42.2
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 2.2e-20 103.2 201 40.3
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.9e-20 102.8 205 41.5
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 8.4e-20 101.3 213 39.4
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.9e-19 100.1 90 64.4
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.5e-19 99.8 209 34.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 4.2e-19 99.0 206 37.9
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.1e-18 96.7 91 59.3
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.1e-18 96.7 238 34.0
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 2.7e-18 96.3 207 39.1
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.5e-18 95.9 199 38.7
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.3e-17 94.0 205 38.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.8e-17 93.6 202 35.6
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.8e-17 93.6 195 39.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 3.0e-17 92.8 182 40.1
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 3.0e-17 92.8 236 33.1
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 5.1e-17 92.0 211 36.0
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 6.7e-17 91.7 196 37.2
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 8.7e-17 91.3 80 65.0
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.5e-16 90.5 196 39.8
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.5e-16 90.5 199 37.2
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.3e-16 89.0 222 33.8
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 4.3e-16 89.0 193 37.3
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.2e-15 85.1 186 35.5
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 8.2e-15 84.7 189 33.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.4e-14 84.0 193 33.2
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.1e-14 82.8 179 35.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 4.0e-14 82.4 204 32.8
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 5.3e-14 82.0 179 36.9
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 9.0e-14 81.3 174 33.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-13 80.9 177 36.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-13 80.1 181 33.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.0e-13 80.1 161 37.9
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.4e-13 79.3 184 35.9
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 4.5e-13 79.0 177 33.9
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.8e-13 78.6 176 36.9
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 7.6e-13 78.2 185 35.7
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 7.6e-13 78.2 185 35.7
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 2.2e-12 76.6 185 34.1
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-12 76.6 181 34.3
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-12 76.6 185 34.1
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 2.2e-12 76.6 185 34.1
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.1e-11 74.3 178 36.0
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.1e-11 74.3 187 30.5
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.2e-10 70.9 73 49.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.6e-10 70.5 190 34.7
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.5e-10 69.3 181 33.1
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.5e-10 69.3 181 33.1
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-09 65.9 186 33.3
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 5.1e-09 65.5 76 48.7
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 5.1e-09 65.5 189 30.2
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 8.7e-09 64.7 198 31.8
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 2.5e-08 63.2 184 27.7
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 5.7e-08 62.0 182 28.6
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.7e-08 61.2 82 42.7
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.2e-07 60.1 66 48.5
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.8e-07 59.7 193 34.2
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.7e-07 59.3 181 30.9
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.4e-06 57.4 42 66.7
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.8e-06 57.0 58 50.0
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.4e-06 56.6 58 50.0
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.1e-06 56.2 59 50.8
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 6.9e-06 55.1 191 26.7


User provided reference genes

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