Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 1.0e-238 829.7 441 100.0
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 7.3e-208 727.2 434 90.8
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 2.7e-194 682.2 434 85.5
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 1.0e-193 680.2 427 85.7
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 1.0e-193 680.2 434 85.3
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 4.5e-189 664.8 419 85.2
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 3.7e-167 592.0 433 72.5
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 5.1e-161 571.6 434 69.6
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.5e-160 570.1 434 71.0
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.5e-160 570.1 434 71.0
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 1.7e-159 566.6 434 70.7
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 2.0e-157 559.7 434 68.0
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.6e-154 550.1 434 67.7
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 1.4e-153 547.0 434 68.4
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 1.8e-153 546.6 434 67.3
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 1.1e-152 543.9 448 66.7
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 2.6e-152 542.7 434 68.7
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 8.2e-151 537.7 418 69.1
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 1.1e-150 537.3 434 66.1
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 1.1e-150 537.3 422 68.7
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 1.8e-150 536.6 450 64.9
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 2.4e-150 536.2 434 67.5
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.2e-149 533.9 434 65.9
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.0e-149 533.1 434 65.9
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 7.7e-149 531.2 434 65.0
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 1.0e-148 530.8 427 67.2
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.0e-148 530.8 434 67.1
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 1.3e-148 530.4 435 65.7
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 1.7e-148 530.0 434 66.4
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 1.7e-148 530.0 434 66.4
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.7e-148 530.0 431 66.1
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 1.7e-148 530.0 434 65.2
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 2.9e-148 529.3 434 65.7
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.0e-148 528.5 434 66.4
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 5.0e-148 528.5 434 65.2
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 6.5e-148 528.1 434 66.1
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.1e-147 527.3 434 65.2
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 7.2e-147 524.6 434 65.0
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 9.4e-147 524.2 434 66.8
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 9.4e-147 524.2 434 65.9
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 9.4e-147 524.2 434 65.9
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 1.6e-146 523.5 434 65.2
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 2.1e-146 523.1 434 66.4
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 3.6e-146 522.3 420 66.2
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 4.7e-146 521.9 434 64.1
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 8.0e-146 521.2 434 64.5
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 8.0e-146 521.2 434 65.2
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.4e-145 520.4 434 65.7
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 1.4e-145 520.4 434 64.5
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 3.9e-145 518.8 434 65.7
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 3.9e-145 518.8 434 65.2
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 5.2e-145 518.5 435 64.6
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 2.0e-144 516.5 434 63.8
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 2.6e-144 516.2 434 65.0
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 4.4e-144 515.4 434 65.0
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 9.7e-144 514.2 434 63.8
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 1.3e-143 513.8 441 63.3
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 1.7e-143 513.5 434 63.4
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 2.8e-143 512.7 434 64.3
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 6.3e-143 511.5 434 63.8
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 1.4e-142 510.4 434 62.9
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 1.8e-142 510.0 434 62.9
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 2.4e-142 509.6 413 65.4
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 4.1e-142 508.8 434 63.8
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 4.1e-142 508.8 427 63.7
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 1.2e-141 507.3 434 63.1
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 1.6e-141 506.9 427 64.6
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 2.0e-141 506.5 434 62.9
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 3.5e-141 505.8 434 62.4
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 4.5e-141 505.4 434 62.7
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.3e-140 503.8 434 63.1
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 2.9e-140 502.7 429 62.7
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 3.2e-139 499.2 435 62.8
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 4.2e-139 498.8 431 62.2
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 2.1e-138 496.5 412 65.3
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 4.0e-137 492.3 436 62.2
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 8.8e-137 491.1 434 62.4
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 2.6e-136 489.6 435 60.0
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 3.4e-136 489.2 435 61.4
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 4.4e-136 488.8 423 62.4
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 4.4e-136 488.8 423 62.4
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 4.4e-136 488.8 423 62.4
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 9.7e-136 487.6 414 64.5
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 2.2e-135 486.5 435 61.4
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 2.8e-135 486.1 434 60.6
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 3.1e-134 482.6 420 61.9
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 2.0e-133 479.9 434 60.6
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 1.5e-131 473.8 434 59.9
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 8.0e-130 468.0 395 65.1
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 2.8e-127 459.5 430 57.7
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 2.0e-125 453.4 434 57.6
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 6.6e-124 448.4 434 56.7
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.6e-122 443.7 424 57.8
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.8e-121 440.3 376 63.6
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 5.2e-121 438.7 431 58.2
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 4.9e-119 432.2 424 55.9
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 4.5e-117 425.6 424 54.7
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 1.1e-115 421.0 424 54.7
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 5.6e-115 418.7 435 52.9
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 6.4e-111 405.2 432 55.1
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 6.2e-106 388.7 431 49.7
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 7.1e-102 375.2 451 48.8
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 1.1e-99 367.9 394 52.0
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.7e-93 346.7 191 97.4
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 1.5e-91 340.9 428 45.8
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 3.6e-90 336.3 426 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 8.1e-82 308.5 432 43.3
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 2.4e-78 297.0 191 82.7
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 2.4e-78 297.0 191 82.7
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 1.3e-74 284.6 183 82.5
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.4e-72 276.6 315 52.7
Actinidia26096 Actinidia chinensis HOM05D003193 ORTHO05D023334 5.5e-54 216.1 221 52.0
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 5.7e-43 179.5 443 30.5
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 2.8e-42 177.2 126 75.4
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 1.3e-39 168.3 206 46.1
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 7.9e-37 159.1 210 44.3
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 4.5e-24 116.7 98 66.3
DCAR_029995 Daucus carota HOM05D003193 ORTHO05D023334 1.7e-23 114.8 71 71.8
DCAR_032356 Daucus carota HOM05D003193 ORTHO05D023334 1.7e-23 114.8 71 71.8
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 2.2e-23 114.4 72 80.6
Manes.08G142350 Manihot esculenta HOM05D003193 ORTHO05D023334 1.7e-18 98.2 99 52.5
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 2.0e-16 91.3 55 81.8
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 1.4e-09 68.6 58 67.2
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 3.1e-09 67.4 46 78.3
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 7.7e-08 62.8 60 65.0


User provided reference genes

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