Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.6e-98 362.1 188 100.0
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.2e-52 209.5 182 65.9
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.9e-52 209.1 182 65.9
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.4e-51 206.8 187 64.7
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.4e-51 206.8 187 64.7
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.8e-51 206.5 187 64.7
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.8e-47 192.6 160 65.0
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 2.8e-47 192.6 147 68.7
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 5.2e-46 188.3 159 62.3
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.5e-45 186.8 143 68.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.4e-45 185.3 175 58.3
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 4.4e-45 185.3 182 57.7
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 4.4e-45 185.3 190 58.9
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 4.4e-45 185.3 190 58.9
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 5.8e-45 184.9 145 66.9
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 5.8e-45 184.9 123 75.6
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 7.5e-45 184.5 151 65.6
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 9.8e-45 184.1 185 57.8
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.3e-44 183.7 168 62.5
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.9e-44 182.6 170 60.6
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.7e-44 182.2 176 57.4
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 6.4e-44 181.4 158 62.0
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 8.3e-44 181.0 178 59.6
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 8.3e-44 181.0 170 60.0
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.1e-43 180.6 176 58.0
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.1e-43 180.6 177 59.3
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.9e-43 179.9 178 59.0
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.9e-43 179.9 142 67.6
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 2.4e-43 179.5 154 63.6
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 2.4e-43 179.5 167 60.5
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 3.2e-43 179.1 158 62.0
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.2e-43 179.1 176 57.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 4.1e-43 178.7 158 61.4
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 5.4e-43 178.3 146 64.4
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 5.4e-43 178.3 143 66.4
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 5.4e-43 178.3 178 57.9
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.4e-43 178.3 157 61.8
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 9.2e-43 177.6 178 57.9
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 9.2e-43 177.6 188 58.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 9.2e-43 177.6 158 61.4
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-42 177.2 172 59.3
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.6e-42 176.8 154 61.7
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.0e-42 176.4 178 57.9
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.5e-42 175.6 154 61.0
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 4.6e-42 175.3 173 54.9
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 4.6e-42 175.3 147 63.3
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 4.6e-42 175.3 155 61.9
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 6.0e-42 174.9 152 61.8
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 6.0e-42 174.9 176 56.2
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 7.8e-42 174.5 179 57.0
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.0e-41 174.1 179 56.4
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.0e-41 174.1 162 61.7
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.0e-41 174.1 159 62.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.3e-41 173.7 168 58.9
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.3e-41 173.7 173 58.4
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.3e-41 173.7 144 64.6
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.7e-41 173.3 177 58.2
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.3e-41 172.9 179 56.4
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.9e-41 172.2 173 57.8
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 3.9e-41 172.2 168 60.1
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 3.9e-41 172.2 159 59.7
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 5.0e-41 171.8 179 54.7
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 5.0e-41 171.8 177 58.2
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 6.6e-41 171.4 190 55.3
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 6.6e-41 171.4 173 56.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 8.6e-41 171.0 155 57.4
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 8.6e-41 171.0 179 55.3
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.5e-40 170.2 173 54.9
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.5e-40 170.2 151 58.9
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.9e-40 169.9 173 56.1
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.5e-40 169.5 173 54.3
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 3.3e-40 169.1 167 58.1
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.3e-40 168.7 185 56.2
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 5.6e-40 168.3 177 55.4
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 7.3e-40 167.9 129 65.9
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 7.3e-40 167.9 174 54.6
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.2e-39 167.2 177 56.5
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.2e-39 167.2 176 54.5
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.2e-39 167.2 151 59.6
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.6e-39 166.8 172 55.8
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.6e-39 166.8 158 57.6
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.1e-39 166.4 132 65.2
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 3.6e-39 165.6 159 57.2
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 3.6e-39 165.6 173 54.9
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 3.6e-39 165.6 174 54.6
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.6e-39 165.6 180 52.8
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 6.2e-39 164.9 172 54.1
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 6.2e-39 164.9 174 53.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 6.2e-39 164.9 173 52.6
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-38 164.1 165 57.0
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.1e-38 164.1 165 57.0
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.1e-38 164.1 165 57.0
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.3e-38 162.9 179 52.5
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 2.3e-38 162.9 193 52.8
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.1e-38 162.5 158 58.2
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 4.0e-38 162.2 167 55.7
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.0e-38 162.2 177 54.8
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 4.0e-38 162.2 174 54.0
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.2e-38 161.8 173 54.3
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 6.8e-38 161.4 143 58.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 6.8e-38 161.4 173 53.8
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 8.9e-38 161.0 185 53.5
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.2e-37 160.6 169 56.8
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.5e-37 160.2 175 51.4
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.0e-37 159.8 143 58.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 2.6e-37 159.5 184 51.6
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 4.4e-37 158.7 178 51.1
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 9.9e-37 157.5 150 58.7
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.3e-36 157.1 179 49.7
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.3e-36 157.1 173 52.6
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.3e-36 157.1 157 58.0
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.7e-36 156.8 157 54.1
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.7e-36 156.8 140 59.3
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.7e-36 155.6 154 54.5
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.7e-36 155.6 137 65.0
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 4.9e-36 155.2 189 51.9
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 8.3e-36 154.5 157 58.6
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.4e-35 153.7 102 80.4
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.9e-35 153.3 158 57.6
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 9.2e-35 151.0 142 54.9
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 9.2e-35 151.0 129 62.0
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.2e-34 150.6 193 49.7
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.2e-34 150.6 120 73.3
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.7e-34 149.4 155 58.1
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 6.0e-34 148.3 157 55.4
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.1e-32 144.1 180 46.7
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.1e-32 144.1 173 50.3
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 4.3e-32 142.1 159 54.1
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.1e-31 139.8 113 64.6
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 4.7e-31 138.7 126 57.9
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.1e-30 136.0 183 47.0
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.0e-29 133.3 130 56.9
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-28 130.6 104 67.3
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.9e-28 129.4 119 59.7
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 3.8e-28 129.0 120 54.2
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.9e-28 128.6 127 58.3
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.4e-28 128.3 127 58.3
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-27 127.5 105 66.7
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.2e-26 124.0 181 46.4
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 4.6e-26 122.1 120 57.5
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.5e-24 117.1 120 55.0
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.9e-24 116.7 120 55.0
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.2e-23 114.0 163 47.9
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.8e-22 110.2 60 81.7
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.8e-22 110.2 126 45.2
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 1.5e-21 107.1 74 70.3
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 5.8e-21 105.1 83 72.3
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 5.8e-21 105.1 105 46.7
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 7.6e-21 104.8 86 60.5
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 5.4e-19 98.6 87 52.9
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.0e-17 94.4 74 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.0e-17 92.8 125 40.0
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.9e-16 90.1 125 39.2
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-14 84.0 58 67.2
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.5e-13 80.5 156 38.5
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 4.5e-13 79.0 80 56.2
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.7e-12 77.0 108 43.5
Nitab4.5_0001781g0110 Nicotiana tabacum HOM05D001560 ORTHO05D010811 3.5e-10 69.3 39 92.3
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-06 57.8 82 47.6


User provided reference genes

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