Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.3e-85 318.9 166 100.0
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.2e-59 233.4 125 97.6
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 9.0e-50 200.7 164 70.1
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 9.0e-50 200.7 164 70.1
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 6.7e-37 157.9 125 68.8
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 4.3e-36 155.2 124 68.5
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 4.3e-36 155.2 139 68.3
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 8.1e-35 151.0 125 68.8
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.4e-34 149.4 121 66.9
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 5.3e-34 148.3 89 86.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 5.3e-34 148.3 127 66.9
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 6.9e-34 147.9 146 58.2
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 9.0e-34 147.5 168 56.5
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.0e-32 144.1 133 60.9
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.3e-32 143.7 143 56.6
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.8e-32 142.1 140 60.7
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.8e-32 142.1 161 52.8
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 4.9e-32 141.7 148 56.1
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.1e-31 140.6 145 56.6
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.1e-31 140.6 146 56.2
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 2.5e-31 139.4 135 60.7
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 9.3e-31 137.5 151 51.7
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 2.7e-30 136.0 128 62.5
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 7.9e-30 134.4 125 59.2
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 7.9e-30 134.4 120 63.3
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.3e-29 133.7 123 61.8
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 5.1e-29 131.7 122 66.4
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 8.7e-29 131.0 141 55.3
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.5e-28 130.2 122 64.8
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.9e-28 129.8 114 58.8
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 2.5e-28 129.4 141 55.3
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.5e-28 129.4 128 58.6
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 3.3e-28 129.0 122 64.8
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.6e-27 126.7 146 50.7
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.6e-27 126.7 134 57.5
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.1e-27 126.3 126 57.1
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.1e-27 126.3 148 52.0
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 3.7e-27 125.6 116 58.6
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 6.2e-27 124.8 133 57.1
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 8.2e-27 124.4 143 53.8
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 8.2e-27 124.4 143 53.8
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.1e-26 124.0 135 52.6
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.8e-26 123.2 113 61.1
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.4e-26 122.9 116 57.8
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 3.1e-26 122.5 122 59.8
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 3.1e-26 122.5 109 61.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.5e-25 120.2 96 69.8
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 2.0e-25 119.8 133 54.9
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.0e-25 119.8 119 59.7
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 2.0e-25 119.8 138 52.9
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 2.0e-25 119.8 119 59.7
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 4.5e-25 118.6 111 59.5
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.5e-25 118.6 123 59.3
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.5e-25 118.6 123 59.3
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 4.5e-25 118.6 122 60.7
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.8e-25 118.2 123 58.5
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.0e-24 117.5 109 63.3
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.3e-24 117.1 138 52.9
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.7e-24 116.7 164 47.6
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 2.2e-24 116.3 126 56.3
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.9e-24 115.9 162 48.8
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 2.9e-24 115.9 138 52.2
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 3.8e-24 115.5 131 51.9
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 3.8e-24 115.5 111 58.6
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 3.8e-24 115.5 134 52.2
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 5.0e-24 115.2 135 51.9
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 5.0e-24 115.2 109 61.5
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 8.4e-24 114.4 120 57.5
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 8.4e-24 114.4 120 57.5
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 8.4e-24 114.4 120 57.5
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 8.4e-24 114.4 123 56.1
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 8.4e-24 114.4 109 55.0
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 8.4e-24 114.4 125 53.6
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 8.4e-24 114.4 133 53.4
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 8.4e-24 114.4 134 54.5
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 8.4e-24 114.4 134 54.5
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.1e-23 114.0 118 54.2
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 3.2e-23 112.5 98 63.3
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 4.2e-23 112.1 83 69.9
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 5.5e-23 111.7 105 61.9
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 7.1e-23 111.3 112 55.4
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 9.3e-23 110.9 118 58.5
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.1e-22 109.8 118 53.4
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 7.9e-22 107.8 140 47.1
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 7.9e-22 107.8 125 51.2
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 1.8e-21 106.7 84 66.7
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.3e-21 106.3 140 48.6
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 2.3e-21 106.3 178 43.3
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 3.0e-21 105.9 177 43.5
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 8.7e-21 104.4 123 53.7
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.1e-20 104.0 108 54.6
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.5e-20 103.6 105 58.1
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.5e-20 103.6 116 56.0
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.5e-20 103.6 116 56.0
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.9e-20 103.2 116 55.2
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 3.3e-20 102.4 85 62.4
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 4.3e-20 102.1 157 43.3
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.4e-20 101.3 116 53.4
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.7e-20 100.9 123 52.8
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-19 100.5 123 53.7
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.6e-19 100.1 143 49.7
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.2e-19 99.8 141 46.8
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.8e-19 99.4 116 54.3
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 2.8e-19 99.4 71 69.0
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.3e-19 98.2 123 51.2
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.1e-18 97.4 116 51.7
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.8e-18 96.7 105 56.2
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 2.4e-18 96.3 117 49.6
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 5.3e-18 95.1 103 52.4
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 6.9e-18 94.7 105 55.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.0e-17 93.2 149 41.6
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.5e-17 92.0 98 54.1
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 7.7e-17 91.3 111 52.3
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.0e-16 90.9 123 49.6
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.2e-16 89.7 115 49.6
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 2.2e-16 89.7 163 39.9
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.2e-16 89.7 141 41.8
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.9e-16 89.4 94 55.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.1e-15 87.4 112 48.2
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 9.4e-15 84.3 69 66.7
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 4.6e-14 82.0 107 47.7
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 7.9e-14 81.3 111 45.0
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.4e-13 80.5 56 69.6
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.4e-13 80.5 184 38.0
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 9.7e-12 74.3 122 39.3
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.3e-11 73.9 65 61.5
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.3e-11 73.9 79 50.6
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 6.3e-11 71.6 65 60.0
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-10 70.5 75 53.3
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-10 70.5 77 54.5
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.4e-10 70.5 75 53.3
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-10 70.1 63 60.3
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 4.1e-10 68.9 94 46.8
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 9.1e-10 67.8 56 62.5
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.5e-09 65.5 54 61.1
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.3e-08 63.9 109 42.2
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.1e-07 60.8 54 63.0
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.4e-07 60.5 89 41.6
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 2.5e-07 59.7 59 50.8
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 5.5e-07 58.5 79 46.8


User provided reference genes

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