Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0016393g0010 Nicotiana tabacum HOM05D000925 ORTHO05D002746 1.7e-31 138.7 67 100.0
Nitab4.5_0000749g0190 Nicotiana tabacum HOM05D000925 ORTHO05D002746 3.2e-22 107.8 63 84.1
Nitab4.5_0002543g0070 Nicotiana tabacum HOM05D000925 ORTHO05D002746 6.0e-21 103.6 59 86.4
Nitab4.5_0007480g0070 Nicotiana tabacum HOM05D000925 ORTHO05D002746 1.8e-20 102.1 59 86.4
Nitab4.5_0001070g0080 Nicotiana tabacum HOM05D000925 ORTHO05D002746 4.3e-19 97.4 59 83.1
Dinv01796 Davidia involucrata HOM05D000925 ORTHO05D002746 5.6e-11 70.5 53 64.2
Dinv29985 Davidia involucrata HOM05D000925 ORTHO05D002746 7.4e-11 70.1 50 66.0
Dinv39850 Davidia involucrata HOM05D000925 ORTHO05D002746 2.4e-09 65.1 60 55.0
Eucgr.H01662 Eucalyptus grandis HOM05D000925 ORTHO05D002746 2.4e-09 65.1 50 60.0
Duzib264G1145 Durio zibethinus HOM05D000925 ORTHO05D002746 3.1e-09 64.7 53 58.5
CSS0023625 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D002746 5.3e-09 63.9 54 57.4
COL.COLO4_11410 Corchorus olitorius HOM05D000925 ORTHO05D002746 5.3e-09 63.9 53 58.5
Actinidia36492 Actinidia chinensis HOM05D000925 ORTHO05D002746 6.9e-09 63.5 50 60.0
TWI73G0618 Tripterygium wilfordii HOM05D000925 ORTHO05D002746 6.9e-09 63.5 64 54.7
Gohir.D03G023400 Gossypium hirsutum HOM05D000925 ORTHO05D002746 9.0e-09 63.2 50 56.0
Gorai.003G024600 Gossypium raimondii HOM05D000925 ORTHO05D002746 9.0e-09 63.2 50 56.0
Potri.009G101300 Populus trichocarpa HOM05D000925 ORTHO05D002746 1.2e-08 62.8 51 62.7
CSS0005246 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D002746 1.5e-08 62.4 50 60.0
Cc07_g05980 Coffea canephora HOM05D000925 ORTHO05D002746 2.0e-08 62.0 60 53.3
Glyma.01G185900 Glycine max HOM05D000925 ORTHO05D002746 2.0e-08 62.0 50 56.0
Actinidia12054 Actinidia chinensis HOM05D000925 ORTHO05D002746 2.6e-08 61.6 52 61.5
CSS0037387 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D002746 2.6e-08 61.6 57 57.9
Dinv15717 Davidia involucrata HOM05D000925 ORTHO05D002746 2.6e-08 61.6 62 53.2
Duzib187G0893 Durio zibethinus HOM05D000925 ORTHO05D002746 2.6e-08 61.6 53 54.7
Eucgr.I00927 Eucalyptus grandis HOM05D000925 ORTHO05D002746 2.6e-08 61.6 50 58.0
FvH4_2g05911 Fragaria vesca HOM05D000925 ORTHO05D002746 2.6e-08 61.6 60 51.7
FAN15G2689 Fragaria x ananassa HOM05D000925 ORTHO05D002746 2.6e-08 61.6 60 51.7
Psat2g166320 Pisum sativum HOM05D000925 ORTHO05D002746 2.6e-08 61.6 50 56.0
QL06p041391 Quercus lobata HOM05D000925 ORTHO05D002746 2.6e-08 61.6 50 54.0
VMungo1215G3359 Vigna mungo HOM05D000925 ORTHO05D002746 2.6e-08 61.6 50 56.0
CiPaw.05G007400 Carya illinoinensis HOM05D000925 ORTHO05D002746 3.4e-08 61.2 51 60.8
Phvul.002G019000 Phaseolus vulgaris HOM05D000925 ORTHO05D002746 3.4e-08 61.2 50 54.0
Thecc.01G055800 Theobroma cacao HOM05D000925 ORTHO05D002746 3.4e-08 61.2 53 54.7
Gohir.A02G157400 Gossypium hirsutum HOM05D000925 ORTHO05D002746 4.5e-08 60.8 54 51.9
Nitab4.5_0002016g0070 Nicotiana tabacum HOM05D000925 ORTHO05D002746 4.5e-08 60.8 60 50.0
Nitab4.5_0009939g0020 Nicotiana tabacum HOM05D000925 ORTHO05D002746 4.5e-08 60.8 60 50.0
TWI09G0342 Tripterygium wilfordii HOM05D000925 ORTHO05D002746 4.5e-08 60.8 50 58.0
Glyma.11G056100 Glycine max HOM05D000925 ORTHO05D002746 5.8e-08 60.5 50 56.0
HanXRQChr09g0263841 Helianthus annuus HOM05D000925 ORTHO05D002746 5.8e-08 60.5 50 54.0
Lalb_Chr09g0323171 Lupinus albus HOM05D000925 ORTHO05D002746 5.8e-08 60.5 60 51.7
Medtr5g017450 Medicago truncatula HOM05D000925 ORTHO05D002746 5.8e-08 60.5 50 54.0
Gohir.A10G091800 Gossypium hirsutum HOM05D000925 ORTHO05D002746 7.6e-08 60.1 50 56.0
Sabra07G0038600 Salix brachista HOM05D000925 ORTHO05D002746 7.6e-08 60.1 50 54.0
TPR.G29522 Trifolium pratense HOM05D000925 ORTHO05D002746 7.6e-08 60.1 50 54.0
TAR376G0970 Trochodendron aralioides HOM05D000925 ORTHO05D002746 7.6e-08 60.1 59 50.8
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.0e-07 59.7 50 58.0
Duzib147G0091 Durio zibethinus HOM05D000925 ORTHO05D002746 1.0e-07 59.7 53 54.7
Manes.13G124400 Manihot esculenta HOM05D000925 ORTHO05D002746 1.0e-07 59.7 52 55.8
RcHm_v2.0_Chr6g0257581 Rosa chinensis HOM05D000925 ORTHO05D002746 1.0e-07 59.7 60 50.0
PGSC0003DMG400004022 Solanum tuberosum HOM05D000925 ORTHO05D002746 1.0e-07 59.7 60 50.0
TAR628G0789 Trochodendron aralioides HOM05D000925 ORTHO05D002746 1.0e-07 59.7 59 55.9
Atru.chr3.330 Acer truncatum HOM05D000925 ORTHO05D002746 1.7e-07 58.9 50 56.0
Actinidia00435 Actinidia chinensis HOM05D000925 ORTHO05D002746 1.7e-07 58.9 50 56.0
arahy.Tifrunner.gnm1.ann1.3RN0DU Arachis hypogaea HOM05D000925 ORTHO05D002746 1.7e-07 58.9 54 50.0
arahy.Tifrunner.gnm1.ann1.L9K6IL Arachis hypogaea HOM05D000925 ORTHO05D002746 1.7e-07 58.9 54 50.0
Cfa004022 Carpinus fangiana HOM05D000925 ORTHO05D002746 1.7e-07 58.9 50 56.0
Haze_15399 Corylus avellana HOM05D000925 ORTHO05D002746 1.7e-07 58.9 50 56.0
Gohir.A12G071000 Gossypium hirsutum HOM05D000925 ORTHO05D002746 1.7e-07 58.9 52 53.8
Gohir.D10G096500 Gossypium hirsutum HOM05D000925 ORTHO05D002746 1.7e-07 58.9 50 54.0
Gohir.D12G069300 Gossypium hirsutum HOM05D000925 ORTHO05D002746 1.7e-07 58.9 52 53.8
Gorai.008G075900 Gossypium raimondii HOM05D000925 ORTHO05D002746 1.7e-07 58.9 52 53.8
Gorai.011G105800 Gossypium raimondii HOM05D000925 ORTHO05D002746 1.7e-07 58.9 50 54.0
Lj4A149T27 Lonicera japonica HOM05D000925 ORTHO05D002746 1.7e-07 58.9 50 56.0
Potri.005G138100 Populus trichocarpa HOM05D000925 ORTHO05D002746 1.7e-07 58.9 60 46.7
Ciclev10026655m.g Citrus clementina HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 54.0
FvH4_1g16050 Fragaria vesca HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 56.0
FAN19G2065 Fragaria x ananassa HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 56.0
FAN23G0138 Fragaria x ananassa HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 56.0
FAN26G2013 Fragaria x ananassa HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 56.0
FAN28G2874 Fragaria x ananassa HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 56.0
Peaxi162Scf00450g00417 Petunia axillaris HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 56.0
Rhsim11G0165100 Rhododendron simsii HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 52.0
SGA_v2.0_scaffold393G50691 Striga asiatica HOM05D000925 ORTHO05D002746 2.2e-07 58.5 50 56.0
Cpa.g.sc55.149 Carica papaya HOM05D000925 ORTHO05D002746 2.9e-07 58.2 50 54.0
Migut.B00354 Erythranthe guttata HOM05D000925 ORTHO05D002746 2.9e-07 58.2 50 56.0
Lj2g0010115 Lotus japonicus HOM05D000925 ORTHO05D002746 2.9e-07 58.2 50 52.0
Solyc02g090840.3 Solanum lycopersicum HOM05D000925 ORTHO05D002746 2.9e-07 58.2 64 46.9
CiPaw.01G018300 Carya illinoinensis HOM05D000925 ORTHO05D002746 3.8e-07 57.8 50 54.0
Ca_18692_v3 Cicer arietinum L. HOM05D000925 ORTHO05D002746 3.8e-07 57.8 54 51.9
Oeu007290.1 Olea europaea HOM05D000925 ORTHO05D002746 3.8e-07 57.8 50 60.0
Potri.007G043900 Populus trichocarpa HOM05D000925 ORTHO05D002746 3.8e-07 57.8 60 46.7
Sabra05G0112500 Salix brachista HOM05D000925 ORTHO05D002746 3.8e-07 57.8 60 46.7
Thecc.02G101500 Theobroma cacao HOM05D000925 ORTHO05D002746 3.8e-07 57.8 50 54.0
vmacro05336 Vaccinium macrocarpon HOM05D000925 ORTHO05D002746 3.8e-07 57.8 50 56.0
CiPaw.02G008300 Carya illinoinensis HOM05D000925 ORTHO05D002746 4.9e-07 57.4 50 54.0
CDE08G1149 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 4.9e-07 57.4 50 56.0
Ciclev10029483m.g Citrus clementina HOM05D000925 ORTHO05D002746 4.9e-07 57.4 45 57.8
Manes.12G100600 Manihot esculenta HOM05D000925 ORTHO05D002746 4.9e-07 57.4 50 54.0
Nitab4.5_0003080g0110 Nicotiana tabacum HOM05D000925 ORTHO05D002746 4.9e-07 57.4 64 48.4
RcHm_v2.0_Chr2g0105661 Rosa chinensis HOM05D000925 ORTHO05D002746 4.9e-07 57.4 50 54.0
CSS0004479 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D002746 6.5e-07 57.0 50 50.0
CSS0039510 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D002746 6.5e-07 57.0 50 50.0
MBI03_g13468_MAGBIO Magnolia biondii HOM05D000925 ORTHO05D002746 6.5e-07 57.0 52 53.8
Oeu013714.1 Olea europaea HOM05D000925 ORTHO05D002746 6.5e-07 57.0 49 61.2
Cfa004532 Carpinus fangiana HOM05D000925 ORTHO05D002746 8.4e-07 56.6 50 52.0
Haze_10091 Corylus avellana HOM05D000925 ORTHO05D002746 8.4e-07 56.6 50 52.0
DCAR_010893 Daucus carota HOM05D000925 ORTHO05D002746 8.4e-07 56.6 60 46.7
Lsat_1_v5_gn_4_166460 Lactuca sativa HOM05D000925 ORTHO05D002746 8.4e-07 56.6 50 50.0
Sabra09G0077100 Salix brachista HOM05D000925 ORTHO05D002746 8.4e-07 56.6 51 56.9
ECA246G1315 Erigeron canadensis HOM05D000925 ORTHO05D002746 1.1e-06 56.2 50 52.0
Nitab4.5_0003503g0020 Nicotiana tabacum HOM05D000925 ORTHO05D002746 1.1e-06 56.2 65 47.7
QL11p035343 Quercus lobata HOM05D000925 ORTHO05D002746 1.1e-06 56.2 50 54.0
Hund16324 Selenicereus undatus HOM05D000925 ORTHO05D002746 1.1e-06 56.2 59 47.5
AUR62001929 Chenopodium quinoa HOM05D000925 ORTHO05D002746 1.4e-06 55.8 50 54.0
Migut.N01185 Erythranthe guttata HOM05D000925 ORTHO05D002746 1.4e-06 55.8 50 54.0
Lsat_1_v5_gn_3_90900 Lactuca sativa HOM05D000925 ORTHO05D002746 1.4e-06 55.8 50 52.0
Lalb_Chr09g0328361 Lupinus albus HOM05D000925 ORTHO05D002746 1.4e-06 55.8 59 47.5
Lalb_Chr16g0384761 Lupinus albus HOM05D000925 ORTHO05D002746 1.4e-06 55.8 60 50.0
Nn5g30303 Nelumbo nucifera HOM05D000925 ORTHO05D002746 1.4e-06 55.8 51 58.8
PSO541G4445 Papaver somniferum HOM05D000925 ORTHO05D002746 1.4e-06 55.8 50 54.0
PSO675G8701 Papaver somniferum HOM05D000925 ORTHO05D002746 1.4e-06 55.8 50 54.0
Sed0011188 Sechium edule HOM05D000925 ORTHO05D002746 1.4e-06 55.8 51 54.9
Sed0015536 Sechium edule HOM05D000925 ORTHO05D002746 1.4e-06 55.8 52 57.7
Sopen02g035460 Solanum pennellii HOM05D000925 ORTHO05D002746 1.4e-06 55.8 64 45.3
SGA_v2.0_scaffold15G07301 Striga asiatica HOM05D000925 ORTHO05D002746 1.4e-06 55.8 60 51.7
VMungo0251G0158 Vigna mungo HOM05D000925 ORTHO05D002746 1.4e-06 55.8 53 49.1
COL.COLO4_32648 Corchorus olitorius HOM05D000925 ORTHO05D002746 1.9e-06 55.5 50 52.0
Phvul.002G094700 Phaseolus vulgaris HOM05D000925 ORTHO05D002746 1.9e-06 55.5 53 49.1
PGR102G0584 Punica granatum HOM05D000925 ORTHO05D002746 1.9e-06 55.5 50 50.0
SGA_v2.0_scaffold336G49162 Striga asiatica HOM05D000925 ORTHO05D002746 1.9e-06 55.5 50 56.0
DCAR_019242 Daucus carota HOM05D000925 ORTHO05D002746 2.5e-06 55.1 50 54.0
ECA238G1425 Erigeron canadensis HOM05D000925 ORTHO05D002746 2.5e-06 55.1 58 44.8
SalBow6G2396 Salvia bowleyana HOM05D000925 ORTHO05D002746 2.5e-06 55.1 50 52.0
AL3G47350 Arabidopsis lyrata HOM05D000925 ORTHO05D002746 3.2e-06 54.7 50 56.0
AT2G15590 Arabidopsis thaliana HOM05D000925 ORTHO05D002746 3.2e-06 54.7 50 56.0
Carub.0003s2936 Capsella rubella HOM05D000925 ORTHO05D002746 3.2e-06 54.7 50 54.0
ClCG01G016820 Citrullus lanatus HOM05D000925 ORTHO05D002746 3.2e-06 54.7 50 56.0
Gohir.D13G039500 Gossypium hirsutum HOM05D000925 ORTHO05D002746 3.2e-06 54.7 50 54.0
Gorai.013G044400 Gossypium raimondii HOM05D000925 ORTHO05D002746 3.2e-06 54.7 50 54.0
Psat7g123880 Pisum sativum HOM05D000925 ORTHO05D002746 3.2e-06 54.7 50 48.0
Actinidia16485 Actinidia chinensis HOM05D000925 ORTHO05D002746 4.2e-06 54.3 60 48.3
CANSAT25G1617 Cannabis sativa HOM05D000925 ORTHO05D002746 4.2e-06 54.3 50 52.0
CANSAT25G3221 Cannabis sativa HOM05D000925 ORTHO05D002746 4.2e-06 54.3 50 52.0
Carub.0005s1666 Capsella rubella HOM05D000925 ORTHO05D002746 4.2e-06 54.3 61 47.5
Carub.0007s0641 Capsella rubella HOM05D000925 ORTHO05D002746 4.2e-06 54.3 50 58.0
Thhalv10011124m.g Eutrema salsugineum HOM05D000925 ORTHO05D002746 4.2e-06 54.3 50 54.0
Glyma.20G015200 Glycine max HOM05D000925 ORTHO05D002746 4.2e-06 54.3 51 51.0
Gohir.D08G139450 Gossypium hirsutum HOM05D000925 ORTHO05D002746 4.2e-06 54.3 48 52.1
Manes.10G056800 Manihot esculenta HOM05D000925 ORTHO05D002746 4.2e-06 54.3 59 47.5
THA.LOC104821552 Tarenaya hassleriana HOM05D000925 ORTHO05D002746 4.2e-06 54.3 50 50.0
TWI31G1407 Tripterygium wilfordii HOM05D000925 ORTHO05D002746 4.2e-06 54.3 50 50.0
TAR381G0679 Trochodendron aralioides HOM05D000925 ORTHO05D002746 4.2e-06 54.3 59 52.5
Gohir.A13G040800 Gossypium hirsutum HOM05D000925 ORTHO05D002746 5.5e-06 53.9 50 52.0
TWI79G0995 Tripterygium wilfordii HOM05D000925 ORTHO05D002746 5.5e-06 53.9 59 45.8
EL10Ac6g15746 Beta vulgaris HOM05D000925 ORTHO05D002746 7.1e-06 53.5 50 54.0
BcaC01g00942 Brassica carinata HOM05D000925 ORTHO05D002746 7.1e-06 53.5 50 54.0
C03p86180 Brassica napus HOM05D000925 ORTHO05D002746 7.1e-06 53.5 50 54.0
BolC3t20906H Brassica oleracea HOM05D000925 ORTHO05D002746 7.1e-06 53.5 50 54.0
BraA08t33684Z Brassica rapa HOM05D000925 ORTHO05D002746 7.1e-06 53.5 50 54.0
CANSAT01G3177 Cannabis sativa HOM05D000925 ORTHO05D002746 7.1e-06 53.5 52 50.0
CsaV3_6G043260 Cucumis sativus L. HOM05D000925 ORTHO05D002746 7.1e-06 53.5 50 54.0
Duzib248G1188 Durio zibethinus HOM05D000925 ORTHO05D002746 7.1e-06 53.5 50 52.0
Gohir.A11G192200 Gossypium hirsutum HOM05D000925 ORTHO05D002746 7.1e-06 53.5 50 52.0
Ah.02g124250 Amaranthus hybridus HOM05D000925 ORTHO05D002746 9.3e-06 53.1 50 54.0
MSTRG.27727 Avicennia marina HOM05D000925 ORTHO05D002746 9.3e-06 53.1 55 50.9
A08p17220 Brassica napus HOM05D009953 ORTHO05D003195 9.3e-06 53.1 50 54.0
Eucgr.I01146 Eucalyptus grandis HOM05D000925 ORTHO05D002746 9.3e-06 53.1 60 50.0
HanXRQChr10g0295421 Helianthus annuus HOM05D000925 ORTHO05D002746 9.3e-06 53.1 47 51.1
Lalb_Chr16g0378531 Lupinus albus HOM05D000925 ORTHO05D002746 9.3e-06 53.1 50 46.0


User provided reference genes

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