Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.9e-117 425.2 212 100.0
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.5e-81 305.8 215 77.7
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 4.8e-72 275.0 228 68.9
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 4.3e-65 251.9 226 65.9
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.8e-63 246.5 227 64.3
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 3.3e-49 199.1 170 68.8
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 5.3e-47 191.8 222 53.2
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 2.2e-45 186.4 210 53.3
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 6.5e-45 184.9 221 52.5
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.4e-44 183.7 242 48.3
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 3.2e-44 182.6 215 51.6
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 9.4e-44 181.0 225 52.4
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 2.1e-43 179.9 219 49.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 6.1e-43 178.3 231 46.8
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.7e-42 174.9 213 52.6
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.7e-42 174.9 213 52.6
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 2.6e-41 172.9 222 50.0
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.6e-41 172.9 212 50.5
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 9.7e-41 171.0 223 49.8
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.7e-40 170.2 228 50.0
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 2.2e-40 169.9 223 48.9
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.2e-40 169.9 213 51.6
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 3.7e-40 169.1 215 49.8
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 4.8e-40 168.7 217 49.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 4.8e-40 168.7 215 49.8
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 8.2e-40 167.9 238 45.8
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.4e-39 167.2 217 49.3
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.4e-39 167.2 219 46.6
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.8e-39 166.8 224 50.9
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-39 166.8 212 50.9
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.4e-39 166.4 212 50.9
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 3.1e-39 166.0 214 48.6
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.1e-39 166.0 235 48.5
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 4.1e-39 165.6 211 51.7
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.3e-39 165.2 226 44.2
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 9.1e-39 164.5 209 48.3
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-38 164.1 212 50.5
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.6e-38 163.7 227 47.1
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.6e-38 163.7 212 49.5
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.0e-38 163.3 215 46.5
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.3e-37 160.6 225 49.8
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.3e-37 160.6 223 47.1
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.9e-37 159.5 220 46.8
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.9e-37 159.5 223 44.8
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 2.9e-37 159.5 186 50.5
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 5.0e-37 158.7 213 45.5
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 5.0e-37 158.7 219 48.9
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 5.0e-37 158.7 221 45.2
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 6.5e-37 158.3 220 45.9
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 8.5e-37 157.9 220 48.2
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.1e-36 157.5 219 48.4
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 5.5e-36 155.2 221 45.2
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 5.5e-36 155.2 201 51.2
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 5.5e-36 155.2 225 44.0
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.2e-36 154.8 219 47.9
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 9.4e-36 154.5 220 46.4
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 9.4e-36 154.5 224 43.8
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 9.4e-36 154.5 209 45.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.2e-35 154.1 210 47.1
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.2e-35 154.1 190 47.9
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.6e-35 153.7 226 44.7
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.6e-35 153.7 219 47.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.1e-35 153.3 224 47.3
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.1e-35 153.3 212 46.7
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-35 152.9 222 42.8
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 2.7e-35 152.9 222 42.8
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 2.7e-35 152.9 222 42.8
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.6e-35 152.5 217 47.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.7e-35 152.1 217 47.0
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 6.1e-35 151.8 222 43.7
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 6.1e-35 151.8 222 43.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 8.0e-35 151.4 222 42.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 8.0e-35 151.4 222 42.3
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 8.0e-35 151.4 150 59.3
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.0e-34 151.0 217 46.5
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.0e-34 151.0 212 45.8
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.8e-34 150.2 209 46.4
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.8e-34 150.2 217 46.5
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.3e-34 149.8 222 45.9
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 3.0e-34 149.4 226 43.4
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.2e-34 148.7 221 44.8
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 5.2e-34 148.7 239 44.4
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-34 148.3 222 43.7
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 6.7e-34 148.3 224 44.2
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 6.7e-34 148.3 222 43.7
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 8.8e-34 147.9 224 43.8
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.5e-33 147.1 209 45.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.5e-33 147.1 215 43.3
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 2.0e-33 146.7 224 43.3
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 2.0e-33 146.7 224 43.3
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.0e-33 146.7 222 43.7
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-33 146.7 224 43.3
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-33 146.7 222 43.7
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.0e-33 146.7 222 43.7
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.0e-33 146.7 208 46.2
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.3e-33 146.0 223 43.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 5.7e-33 145.2 224 42.9
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 2.8e-32 142.9 217 45.2
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.8e-32 142.9 212 44.8
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.7e-32 142.5 246 40.7
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 4.8e-32 142.1 209 42.6
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 4.8e-32 142.1 221 41.6
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.2e-32 141.4 225 43.6
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.4e-31 140.6 213 46.9
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.4e-31 139.8 223 44.4
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 5.3e-31 138.7 231 45.0
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 5.3e-31 138.7 212 44.3
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 5.3e-31 138.7 218 42.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-30 137.1 207 44.4
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.5e-30 136.0 207 43.0
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 5.9e-30 135.2 178 44.9
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.2e-29 133.3 210 42.4
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.9e-29 132.9 213 43.2
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.5e-29 131.7 240 37.5
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.1e-28 131.0 210 41.9
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.9e-28 130.2 208 43.8
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.5e-28 129.8 214 41.1
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 3.2e-28 129.4 226 39.4
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.6e-27 127.1 225 39.1
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.1e-27 126.7 206 41.3
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 6.1e-27 125.2 229 40.6
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.0e-26 124.4 220 40.0
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.8e-26 121.7 182 42.9
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.8e-26 121.7 187 41.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.8e-26 121.7 204 43.1
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 8.8e-26 121.3 245 36.3
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.2e-25 120.9 179 43.6
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 2.0e-25 120.2 210 41.4
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-25 119.8 187 41.2
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 9.8e-25 117.9 217 37.3
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.8e-24 116.3 185 41.1
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 3.7e-24 115.9 179 42.5
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 4.8e-24 115.5 251 34.3
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 3.1e-23 112.8 214 36.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.5e-22 109.0 184 40.8
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 2.2e-21 106.7 193 38.9
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 3.8e-21 105.9 186 38.2
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 8.5e-21 104.8 199 39.7
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-20 104.0 210 35.7
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.5e-20 103.2 211 34.1
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.7e-19 99.8 179 39.1
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 4.7e-19 99.0 139 45.3
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 6.1e-19 98.6 209 35.9
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.5e-17 94.0 210 33.3
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.7e-17 92.0 208 36.1
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 9.8e-17 91.3 233 36.9
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-16 90.5 195 34.4
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.7e-16 90.5 195 34.4
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-15 87.8 190 34.7
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-15 87.8 190 34.7
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 1.4e-15 87.4 190 34.2
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.8e-15 87.0 171 37.4
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.4e-15 86.7 141 43.3
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 7.0e-15 85.1 215 33.0
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 9.2e-15 84.7 214 31.3
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.6e-14 84.0 199 32.2
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.7e-14 83.2 214 31.8
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 7.7e-14 81.6 131 45.0
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.3e-13 80.1 188 33.5
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.0e-13 79.0 213 32.4
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 7.3e-12 75.1 107 43.9
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 6.1e-11 72.0 82 50.0
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 4.0e-10 69.3 253 29.2
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.8e-10 68.6 168 31.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.5e-09 67.4 195 30.3
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.5e-09 67.4 87 40.2
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.0e-09 67.0 147 31.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 7.5e-09 65.1 109 37.6
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.7e-06 56.6 99 40.4
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 4.6e-06 55.8 184 28.8


User provided reference genes

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