Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.8e-307 1057.4 544 100.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 8.0e-297 1023.1 541 96.3
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 2.2e-294 1015.0 541 95.6
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 2.0e-292 1008.4 541 95.4
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 2.6e-287 991.5 541 93.3
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 4.1e-285 984.2 541 91.5
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.3e-285 983.8 541 91.9
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 2.7e-284 981.5 546 91.6
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.9e-284 980.3 541 91.7
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.7e-281 971.5 541 89.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 2.7e-281 971.5 541 90.8
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 3.6e-281 971.1 541 90.4
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 3.6e-281 971.1 541 90.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 6.1e-281 970.3 541 90.6
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 8.0e-281 969.9 541 89.8
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 1.0e-280 969.5 541 89.8
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 1.4e-280 969.1 541 90.4
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 5.2e-280 967.2 541 90.0
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 8.8e-280 966.5 541 90.4
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 3.4e-279 964.5 541 90.2
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 7.5e-279 963.4 541 89.8
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 9.8e-279 963.0 546 90.1
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 1.7e-278 962.2 541 90.4
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 2.2e-278 961.8 541 89.3
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 3.7e-278 961.1 541 89.1
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 4.8e-278 960.7 541 89.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 4.8e-278 960.7 541 90.2
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 6.3e-278 960.3 541 89.6
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 8.3e-278 959.9 541 88.9
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.1e-277 959.5 541 88.4
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 1.4e-277 959.1 541 90.0
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 2.4e-277 958.4 541 90.0
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 1.2e-276 956.1 541 89.3
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.6e-276 955.7 541 89.5
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 2.7e-276 954.9 542 89.1
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 2.7e-276 954.9 541 88.4
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 3.5e-276 954.5 541 89.5
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 4.5e-276 954.1 541 88.9
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 3.8e-275 951.0 541 89.3
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 8.6e-275 949.9 541 87.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 1.5e-274 949.1 541 88.0
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 3.3e-274 948.0 541 88.7
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.2e-274 947.6 541 89.3
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 5.5e-274 947.2 541 88.9
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 7.2e-274 946.8 541 87.4
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 9.5e-274 946.4 541 88.0
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 1.6e-273 945.7 541 87.6
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 2.1e-273 945.3 541 88.0
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 6.1e-273 943.7 541 87.1
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 2.0e-271 938.7 541 87.1
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.5e-271 936.8 541 88.7
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.7e-270 935.6 569 85.2
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.8e-269 932.2 541 87.1
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 2.4e-269 931.8 541 86.9
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 9.2e-269 929.9 541 87.2
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 2.0e-268 928.7 541 86.0
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.5e-266 922.5 539 87.2
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 4.3e-266 921.0 541 89.1
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 4.3e-266 921.0 541 85.0
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 1.6e-265 919.1 541 84.8
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 2.8e-265 918.3 541 87.1
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.8e-264 915.6 541 84.8
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 4.4e-263 911.0 539 84.0
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 9.8e-263 909.8 541 84.5
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 1.3e-262 909.4 545 83.9
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 1.1e-261 906.4 544 84.4
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.1e-261 906.4 530 86.6
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 1.4e-261 906.0 543 84.3
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 1.4e-261 906.0 543 84.3
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 1.4e-261 906.0 543 84.3
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 3.2e-261 904.8 546 83.5
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 4.1e-261 904.4 543 84.0
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 5.4e-261 904.0 543 84.2
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 5.4e-261 904.0 543 84.2
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 1.6e-260 902.5 541 86.0
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 1.6e-260 902.5 541 86.0
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.0e-260 902.1 541 82.6
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 5.0e-259 897.5 541 83.2
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 6.6e-259 897.1 541 84.7
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.9e-258 895.6 543 84.9
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 7.3e-258 893.6 544 85.8
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 7.3e-258 893.6 542 82.7
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 9.5e-258 893.3 545 82.0
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.6e-257 892.5 545 82.2
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 2.8e-257 891.7 543 82.1
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 4.7e-257 891.0 545 82.0
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 8.0e-257 890.2 546 81.9
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 6.8e-256 887.1 545 82.2
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.5e-255 885.9 545 81.8
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.5e-255 885.9 545 81.8
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.5e-255 885.9 545 81.8
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.4e-255 884.8 546 85.0
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 4.1e-253 877.9 541 83.9
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 7.0e-253 877.1 546 83.5
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.2e-253 876.7 541 83.5
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.6e-252 875.9 541 83.7
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 7.3e-250 867.1 542 80.4
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.9e-247 856.7 541 78.7
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.9e-246 855.1 538 83.3
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.4e-245 852.8 542 78.8
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.1e-245 851.3 541 78.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.5e-242 842.0 541 79.1
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 9.9e-239 830.1 542 78.2
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 1.3e-238 829.7 546 77.5
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.6e-236 821.2 465 89.9
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-228 796.6 539 77.6
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.1e-228 795.8 562 75.8
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 8.1e-225 783.9 480 82.1
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 2.6e-223 778.9 542 75.5
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.0e-219 765.4 480 81.7
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.3e-211 740.0 395 96.5
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.8e-207 724.5 465 79.1
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.4e-199 698.7 421 83.6
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 6.5e-198 694.5 541 67.5
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.0e-190 670.6 541 69.7
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.2e-181 638.6 497 70.4
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 7.4e-178 627.9 539 64.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 7.0e-176 621.3 542 59.0
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.8e-171 606.7 465 72.9
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.0e-171 605.9 523 58.7
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.0e-171 605.9 339 90.3
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.2e-171 605.1 349 88.3
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.4e-152 543.1 544 51.5
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.9e-144 516.9 504 52.4
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.4e-144 516.5 516 50.6
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-131 473.4 340 76.5
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.1e-120 438.0 536 44.2
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.6e-116 424.1 499 45.7
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.6e-114 416.8 510 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.3e-112 408.3 497 45.9
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-105 387.5 399 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.0e-99 366.3 363 55.1
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.0e-91 339.7 202 81.7
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.7e-87 327.0 191 86.4
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.1e-64 251.9 550 34.4
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.2e-56 222.6 171 72.5
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.5e-53 214.9 109 93.6
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.2e-50 205.3 171 66.7
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.5e-32 144.4 78 89.7
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.5e-32 144.4 70 92.9
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 4.6e-26 123.6 101 63.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 1.5e-24 118.6 60 86.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.1e-23 114.8 60 85.0
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 2.5e-16 91.3 56 76.8
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.2 30 73.3
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 3.1e-06 57.8 34 79.4


User provided reference genes

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