Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0016001g0010 Nicotiana tabacum HOM05D007659 ORTHO05D009227 6.2e-28 126.7 63 100.0
Peaxi162Scf00038g00725 Petunia axillaris HOM05D007659 ORTHO05D009227 2.7e-23 111.3 63 87.3
Solyc07g006040.3 Solanum lycopersicum HOM05D007659 ORTHO05D009227 2.8e-20 101.3 63 77.8
PGSC0003DMG400011214 Solanum tuberosum HOM05D007659 ORTHO05D009227 6.3e-20 100.1 63 76.2
MD12G1196500 Malus domestica HOM05D007659 ORTHO05D009227 5.3e-19 97.1 61 80.3
Actinidia28561 Actinidia chinensis HOM05D007659 ORTHO05D009227 1.2e-18 95.9 61 78.7
Sabra06G0137200 Salix brachista HOM05D007659 ORTHO05D009227 1.3e-17 92.4 60 70.0
Cc00_g30920 Coffea canephora HOM05D007659 ORTHO05D009227 1.7e-17 92.0 62 74.2
Lj4g0008058 Lotus japonicus HOM05D007659 ORTHO05D009227 2.9e-17 91.3 57 73.7
CARHR238720 Cardamine hirsuta HOM05D007659 ORTHO05D009227 5.0e-17 90.5 60 70.0
Cc02_g28880 Coffea canephora HOM05D007659 ORTHO05D009227 5.0e-17 90.5 62 72.6
AT4G30845 Arabidopsis thaliana HOM05D007659 ORTHO05D009227 6.5e-17 90.1 56 73.2
Sed0026034 Sechium edule HOM05D007659 ORTHO05D009227 6.5e-17 90.1 57 71.9
MSTRG.6163 Avicennia marina HOM05D007659 ORTHO05D009227 1.1e-16 89.4 60 70.0
BcaNung01556 Brassica carinata HOM05D007659 ORTHO05D009227 1.1e-16 89.4 60 66.7
Manes.06G031900 Manihot esculenta HOM05D007659 ORTHO05D009227 1.1e-16 89.4 59 64.4
Rhsim01G0023600 Rhododendron simsii HOM05D007659 ORTHO05D009227 1.1e-16 89.4 57 73.7
Migut.J01394 Erythranthe guttata HOM05D007659 ORTHO05D009227 1.4e-16 89.0 61 67.2
Carub.0007s0971 Capsella rubella HOM05D007659 ORTHO05D009227 1.9e-16 88.6 56 71.4
Duzib187G1272 Durio zibethinus HOM05D007659 ORTHO05D009227 1.9e-16 88.6 60 71.7
Aqoxy7G03300 Aquilegia oxysepala HOM05D007659 ORTHO05D009227 2.5e-16 88.2 59 71.2
Aa31LG2G19540 Aethionema arabicum HOM05D007659 ORTHO05D009227 3.2e-16 87.8 61 67.2
AL7G21270 Arabidopsis lyrata HOM05D007659 ORTHO05D009227 3.2e-16 87.8 60 66.7
CANSAT11G2634 Cannabis sativa HOM05D007659 ORTHO05D009227 3.2e-16 87.8 58 67.2
RcHm_v2.0_Chr4g0405451 Rosa chinensis HOM05D007659 ORTHO05D009227 3.2e-16 87.8 58 70.7
Cfa019408 Carpinus fangiana HOM05D007659 ORTHO05D009227 4.2e-16 87.4 57 70.2
Sc06g0005340 Simmondsia chinensis HOM05D007659 ORTHO05D009227 4.2e-16 87.4 58 72.4
BcaNung02735 Brassica carinata HOM05D007659 ORTHO05D009227 7.2e-16 86.7 57 68.4
A03p60380 Brassica napus HOM05D007659 ORTHO05D009227 7.2e-16 86.7 57 68.4
BraA03t15078Z Brassica rapa HOM05D007659 ORTHO05D009227 7.2e-16 86.7 57 68.4
Lalb_Chr12g0198851 Lupinus albus HOM05D007659 ORTHO05D009227 7.2e-16 86.7 58 67.2
PSO782G2453 Papaver somniferum HOM05D007659 ORTHO05D009227 7.2e-16 86.7 62 62.9
Dinv41341 Davidia involucrata HOM05D007659 ORTHO05D009227 9.3e-16 86.3 57 68.4
Hma1.2p1_1084F.1_g255330 Hydrangea macrophylla HOM05D007659 ORTHO05D009227 9.3e-16 86.3 58 69.0
TWI63G1302 Tripterygium wilfordii HOM05D007659 ORTHO05D009227 9.3e-16 86.3 58 67.2
VMungo1215G2964 Vigna mungo HOM05D007659 ORTHO05D009227 9.3e-16 86.3 51 74.5
FAN07G1615 Fragaria x ananassa HOM05D007659 ORTHO05D009227 1.2e-15 85.9 61 70.5
FAN22G0789 Fragaria x ananassa HOM05D007659 ORTHO05D009227 1.2e-15 85.9 61 70.5
Gohir.A04G040700 Gossypium hirsutum HOM05D007659 ORTHO05D009227 1.2e-15 85.9 57 68.4
Gohir.D05G342500 Gossypium hirsutum HOM05D007659 ORTHO05D009227 1.2e-15 85.9 57 68.4
Gorai.009G368800 Gossypium raimondii HOM05D007659 ORTHO05D009227 1.2e-15 85.9 57 68.4
PSO063G0802 Papaver somniferum HOM05D007659 ORTHO05D009227 1.2e-15 85.9 62 62.9
arahy.Tifrunner.gnm1.ann1.FWLQ6H Arachis hypogaea HOM05D007659 ORTHO05D009227 2.1e-15 85.1 55 67.3
arahy.Tifrunner.gnm1.ann1.KUG4GU Arachis hypogaea HOM05D007659 ORTHO05D009227 2.1e-15 85.1 55 67.3
MELO3C010198.2 Cucumis melo HOM05D007659 ORTHO05D009227 2.1e-15 85.1 55 69.1
FvH4_4g09760 Fragaria vesca HOM05D007659 ORTHO05D009227 2.1e-15 85.1 61 68.9
Medtr4g130250 Medicago truncatula HOM05D007659 ORTHO05D009227 2.1e-15 85.1 57 66.7
Thecc.09G154300 Theobroma cacao HOM05D007659 ORTHO05D009227 2.1e-15 85.1 60 68.3
ClCG06G012660 Citrullus lanatus HOM05D007659 ORTHO05D009227 2.7e-15 84.7 55 67.3
Lsat_1_v5_gn_7_50920 Lactuca sativa HOM05D007659 ORTHO05D009227 2.7e-15 84.7 60 63.3
ATR0111G019 Amborella trichopoda HOM05D007659 ORTHO05D009227 3.6e-15 84.3 58 67.2
EL10Ac4g09658 Beta vulgaris HOM05D007659 ORTHO05D009227 3.6e-15 84.3 55 65.5
Haze_19128 Corylus avellana HOM05D007659 ORTHO05D009227 3.6e-15 84.3 57 68.4
Haze_19136 Corylus avellana HOM05D007659 ORTHO05D009227 3.6e-15 84.3 57 68.4
Prupe.1G101900 Prunus persica HOM05D007659 ORTHO05D009227 3.6e-15 84.3 54 72.2
C07p58250 Brassica napus HOM05D007659 ORTHO05D009227 4.6e-15 84.0 57 66.7
BolC7t46283H Brassica oleracea HOM05D007659 ORTHO05D009227 4.6e-15 84.0 57 66.7
Eucgr.L01549 Eucalyptus grandis HOM05D007659 ORTHO05D009227 4.6e-15 84.0 55 70.9
MD04G1182900 Malus domestica HOM05D007659 ORTHO05D009227 4.6e-15 84.0 52 76.9
QL02p094226 Quercus lobata HOM05D007659 ORTHO05D009227 4.6e-15 84.0 57 68.4
SalBow6G0978 Salvia bowleyana HOM05D007659 ORTHO05D009227 4.6e-15 84.0 64 62.5
Haze_19124 Corylus avellana HOM05D007659 ORTHO05D009227 6.1e-15 83.6 57 66.7
Thhalv10026581m.g Eutrema salsugineum HOM05D007659 ORTHO05D009227 6.1e-15 83.6 60 65.0
Eucgr.C02516 Eucalyptus grandis HOM05D007659 ORTHO05D009227 7.9e-15 83.2 55 70.9
PGR102G1560 Punica granatum HOM05D007659 ORTHO05D009227 7.9e-15 83.2 58 63.8
Haze_19129 Corylus avellana HOM05D007659 ORTHO05D009227 1.0e-14 82.8 57 66.7
Haze_27708 Corylus avellana HOM05D007659 ORTHO05D009227 1.0e-14 82.8 57 66.7
CsaV3_1G029210 Cucumis sativus L. HOM05D007659 ORTHO05D009227 1.3e-14 82.4 55 67.3
GSVIVG01023691001 Vitis vinifera HOM05D007659 ORTHO05D009227 1.3e-14 82.4 57 66.7
Ca_21156_v3 Cicer arietinum L. HOM05D007659 ORTHO05D009227 1.8e-14 82.0 51 72.5
HanXRQChr03g0066011 Helianthus annuus HOM05D007659 ORTHO05D009227 3.0e-14 81.3 55 69.1
Nn8g40114 Nelumbo nucifera HOM05D007659 ORTHO05D009227 3.0e-14 81.3 60 68.3
Phvul.003G153300 Phaseolus vulgaris HOM05D007659 ORTHO05D009227 3.0e-14 81.3 53 64.2
Hund07205 Selenicereus undatus HOM05D007659 ORTHO05D009227 3.0e-14 81.3 55 69.1
TPR.G24875 Trifolium pratense HOM05D007659 ORTHO05D009227 3.0e-14 81.3 53 67.9
unitig_736.g22510 Utricularia gibba HOM05D007659 ORTHO05D009227 3.9e-14 80.9 60 60.0
vmacro13049 Vaccinium macrocarpon HOM05D007659 ORTHO05D009227 8.7e-14 79.7 74 58.1
Ciclev10009916m.g Citrus clementina HOM05D007659 ORTHO05D009227 1.1e-13 79.3 54 68.5
Glyma.17G071000 Glycine max HOM05D007659 ORTHO05D009227 1.1e-13 79.3 51 64.7
Potri.006G180200 Populus trichocarpa HOM05D007659 ORTHO05D009227 1.9e-13 78.6 48 72.9
Haze_19137 Corylus avellana HOM05D007659 ORTHO05D009227 3.3e-13 77.8 54 66.7
HPP92_006698 Vanilla planifolia HOM05D007659 ORTHO05D009227 3.3e-13 77.8 58 58.6
Psat4g010200 Pisum sativum HOM05D007659 ORTHO05D009227 5.7e-13 77.0 51 64.7
Haze_19130 Corylus avellana HOM05D007659 ORTHO05D009227 9.7e-13 76.3 54 66.7
Os03g0210900 Oryza sativa ssp. japonica HOM05D007659 ORTHO05D009227 1.3e-12 75.9 57 59.6
CDE04G0159 Ceratophyllum demersum HOM05D007659 ORTHO05D009227 1.6e-12 75.5 54 63.0
Ah.06g188510 Amaranthus hybridus HOM05D000987 ORTHO05D000831 2.2e-12 75.1 60 60.0
Zm00001eb400430 Zea mays HOM05D007659 ORTHO05D009227 3.7e-12 74.3 52 67.3
Cfa020779 Carpinus fangiana HOM05D001390 ORTHO05D001522 6.3e-12 73.6 61 59.0
THA.LOC104803555 Tarenaya hassleriana HOM05D007659 ORTHO05D009227 1.1e-11 72.8 54 61.1
CiPaw.15G164100 Carya illinoinensis HOM05D007659 ORTHO05D009227 1.4e-11 72.4 46 69.6
Haze_19127 Corylus avellana HOM05D007659 ORTHO05D009227 1.4e-11 72.4 54 63.0
Pp3c17_8590 Physcomitrium patens HOM05D007659 ORTHO05D009227 2.0e-10 68.6 59 54.2
Mapoly0004s0134 Marchantia polymorpha HOM05D007659 ORTHO05D009227 5.0e-09 63.9 60 51.7
CBR_g10976 Chara braunii HOM05D007659 ORTHO05D009227 6.5e-09 63.5 52 55.8


User provided reference genes

Program Settings