Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.3e-83 311.2 152 100.0
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 9.0e-81 303.5 150 98.0
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 4.6e-77 291.2 148 93.9
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 8.7e-76 287.0 148 93.9
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.3e-74 283.1 148 92.6
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.3e-74 283.1 148 92.6
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 3.7e-74 281.6 150 90.7
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.9e-71 271.2 145 86.2
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.1e-70 270.0 144 86.8
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 7.1e-70 267.3 148 85.8
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 4.6e-69 264.6 144 86.1
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.3e-68 263.1 148 84.5
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 1.8e-68 262.7 143 85.3
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.3e-68 262.3 138 87.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.5e-67 259.6 145 82.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 3.3e-67 258.5 144 84.0
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 9.6e-67 256.9 145 82.8
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 3.4e-64 248.4 148 77.7
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 8.5e-63 243.8 142 78.9
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 1.1e-62 243.4 145 75.9
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.4e-62 243.0 142 78.9
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.4e-62 243.0 145 77.9
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 9.3e-62 240.4 148 77.7
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 3.6e-61 238.4 143 75.5
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 6.1e-61 237.7 136 77.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.0e-60 236.9 139 77.7
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.3e-60 236.5 142 76.8
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.3e-60 236.5 149 75.2
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.3e-60 235.7 142 75.4
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.9e-60 235.0 138 77.5
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.9e-60 235.0 145 75.2
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 5.1e-60 234.6 136 76.5
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.5e-59 233.0 141 77.3
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.5e-59 233.0 148 72.3
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.5e-59 232.3 147 73.5
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 5.7e-59 231.1 143 72.0
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 7.4e-59 230.7 141 73.8
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.2e-58 229.2 146 73.3
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 6.3e-58 227.6 148 75.0
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.1e-57 226.9 141 73.8
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.1e-57 226.9 136 75.0
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 6.9e-57 224.2 142 72.5
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.5e-56 223.0 144 72.2
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 2.6e-56 222.2 138 73.9
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.6e-56 222.2 147 68.0
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.0e-55 220.3 150 68.7
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.2e-55 219.2 145 69.0
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 5.0e-55 218.0 142 71.8
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 6.5e-55 217.6 141 70.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.1e-54 216.9 140 72.9
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 1.1e-54 216.9 148 68.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 2.5e-54 215.7 134 73.9
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 5.5e-54 214.5 139 71.9
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 5.5e-54 214.5 139 71.9
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 7.2e-54 214.2 145 71.7
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 9.4e-54 213.8 146 67.8
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.2e-53 213.4 140 70.0
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.1e-53 212.6 150 68.0
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.7e-53 212.2 139 71.2
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 2.7e-53 212.2 148 66.2
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 4.6e-53 211.5 137 72.3
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 6.1e-53 211.1 130 75.4
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 7.9e-53 210.7 142 70.4
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 7.9e-53 210.7 144 71.5
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.0e-52 210.3 132 72.0
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.4e-52 209.9 137 71.5
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.8e-52 209.5 134 67.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-52 209.5 129 76.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 1.8e-52 209.5 145 69.0
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.0e-52 208.8 129 75.2
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.9e-52 208.4 129 75.2
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 8.8e-52 207.2 211 53.1
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.1e-51 206.8 131 73.3
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.1e-51 206.8 135 67.4
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.1e-51 206.8 131 75.6
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.5e-51 206.5 129 74.4
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.0e-51 206.1 133 70.7
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 2.0e-51 206.1 142 67.6
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.6e-51 205.7 147 66.7
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 4.4e-51 204.9 134 72.4
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.4e-51 204.9 135 68.9
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 5.7e-51 204.5 141 70.2
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 5.7e-51 204.5 134 72.4
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 5.7e-51 204.5 131 72.5
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 5.7e-51 204.5 135 70.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 5.7e-51 204.5 135 70.4
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 7.4e-51 204.1 132 71.2
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 7.4e-51 204.1 121 77.7
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.7e-50 203.0 131 71.8
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.2e-50 202.6 128 75.0
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.2e-50 202.6 128 75.0
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.2e-50 202.6 128 75.0
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 6.3e-50 201.1 135 65.9
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.1e-49 200.3 154 63.0
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.1e-49 200.3 135 69.6
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.1e-49 200.3 135 69.6
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.1e-49 200.3 135 69.6
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.8e-49 199.5 144 58.3
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.8e-49 199.5 131 69.5
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 2.4e-49 199.1 145 64.1
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.2e-48 196.8 144 57.6
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 3.4e-48 195.3 142 64.8
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.0e-47 193.7 131 66.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.0e-47 193.7 127 70.9
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.3e-47 193.4 147 61.2
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 8.5e-47 190.7 143 65.0
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.9e-46 189.5 131 65.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 2.5e-46 189.1 127 71.7
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 7.2e-46 187.6 145 63.4
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 4.7e-45 184.9 140 59.3
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 6.1e-45 184.5 143 62.2
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.8e-42 175.6 121 66.1
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 3.8e-39 165.2 213 43.2
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 8.5e-39 164.1 126 61.9
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.5e-38 162.5 112 66.1
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 7.2e-38 161.0 132 58.3
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-35 151.8 129 56.6
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 8.2e-34 147.5 134 48.5
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.1e-33 147.1 134 47.8
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 3.1e-33 145.6 134 47.8
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 8.5e-31 137.5 143 51.7
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 8.5e-31 137.5 84 75.0
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 5.5e-30 134.8 119 52.1
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 5.5e-30 134.8 118 51.7
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 7.2e-30 134.4 83 74.7
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.1e-29 132.9 82 75.6
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-29 132.9 119 51.3
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 8.0e-29 131.0 143 42.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.3e-28 129.4 97 63.9
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 7.5e-27 124.4 114 50.9
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.3e-26 123.6 84 69.0
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 2.0e-24 116.3 136 41.9
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 2.0e-24 116.3 163 39.3
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 3.5e-24 115.5 95 53.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.5e-24 115.5 136 41.2
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.2e-22 109.0 134 40.3
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 1.7e-18 96.7 65 73.8
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.1e-17 92.4 58 70.7
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.1e-17 92.0 58 70.7
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 9.2e-17 90.9 86 53.5
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 1.7e-15 86.7 135 31.1
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.5e-14 83.6 135 29.6
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 7.3e-14 81.3 72 52.8
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 3.7e-10 68.9 106 34.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 1.3e-07 60.5 38 68.4


User provided reference genes

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