Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.0e-102 376.7 189 100.0
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.2e-96 355.1 195 92.3
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.7e-74 282.3 194 77.8
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.7e-68 263.1 207 70.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.9e-68 262.3 209 70.3
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.7e-68 261.9 200 74.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.7e-68 261.9 200 74.0
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 3.7e-68 261.9 200 74.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.1e-67 260.4 207 68.1
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.1e-67 258.5 199 73.4
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.7e-65 253.1 199 71.4
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.9e-64 249.6 202 66.3
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 3.3e-64 248.8 199 67.8
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 4.3e-64 248.4 214 65.9
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 7.3e-64 247.7 196 67.9
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 6.2e-63 244.6 186 71.5
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 8.0e-63 244.2 188 70.7
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-62 243.8 217 64.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.4e-62 243.4 188 68.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.4e-62 243.4 211 64.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.8e-62 243.0 206 66.0
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 6.8e-62 241.1 206 65.5
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 6.8e-62 241.1 205 67.8
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.0e-61 239.6 189 68.3
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.6e-61 239.2 220 62.7
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.6e-61 239.2 191 68.6
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 4.4e-61 238.4 206 65.0
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 5.8e-61 238.0 202 66.8
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 7.5e-61 237.7 191 67.0
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.3e-60 236.9 214 63.6
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.3e-60 236.9 206 62.1
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.7e-60 236.5 188 66.5
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 3.7e-60 235.3 211 64.5
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 6.4e-60 234.6 193 66.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 8.3e-60 234.2 195 64.6
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.4e-59 233.4 186 68.8
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.4e-59 232.6 187 69.0
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 4.1e-59 231.9 195 66.7
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 5.4e-59 231.5 188 68.6
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 7.0e-59 231.1 189 68.3
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 7.0e-59 231.1 189 68.3
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 7.0e-59 231.1 189 68.3
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 7.0e-59 231.1 188 68.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.6e-58 229.9 199 67.3
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.6e-58 229.9 211 63.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.6e-58 229.9 203 64.0
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.1e-58 229.6 151 76.8
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.1e-58 229.6 199 64.8
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.1e-58 229.6 215 63.3
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.1e-58 229.6 213 63.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 3.5e-58 228.8 199 66.8
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 3.5e-58 228.8 209 66.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 3.5e-58 228.8 209 66.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.5e-58 228.8 202 65.8
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.6e-58 228.4 194 67.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.6e-58 228.4 210 65.7
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 6.0e-58 228.0 203 64.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 7.8e-58 227.6 191 64.4
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 7.8e-58 227.6 176 69.9
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.0e-57 227.3 210 65.7
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.0e-57 227.3 155 74.2
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.0e-57 227.3 214 62.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.3e-57 226.9 216 61.6
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.0e-57 225.7 216 61.1
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 3.9e-57 225.3 171 73.1
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.1e-57 224.9 202 63.4
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 5.1e-57 224.9 204 63.7
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 5.1e-57 224.9 204 64.7
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.1e-56 223.8 204 60.8
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.5e-56 223.4 202 62.9
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.9e-56 223.0 191 64.9
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.9e-56 223.0 199 63.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.9e-56 223.0 203 64.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.9e-56 223.0 204 64.2
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.9e-56 223.0 188 64.4
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.5e-56 222.6 155 74.2
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 5.6e-56 221.5 199 62.8
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.3e-56 221.1 209 61.2
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.5e-56 220.7 207 61.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 9.5e-56 220.7 179 66.5
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.2e-55 220.3 198 64.1
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-55 219.9 206 61.2
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.1e-55 219.5 209 61.2
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.1e-55 219.5 154 74.7
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.8e-55 219.2 154 74.7
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.8e-55 219.2 154 74.7
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.8e-55 219.2 154 74.7
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.2e-55 218.0 154 74.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.2e-55 218.0 154 74.0
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-54 217.2 205 61.0
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.1e-54 217.2 251 50.6
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.1e-54 215.7 206 62.6
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.1e-54 215.7 153 71.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 4.0e-54 215.3 304 48.7
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.2e-53 213.8 200 64.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.4e-53 211.8 199 61.8
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 9.9e-53 210.7 191 61.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.3e-52 210.3 202 58.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.9e-52 209.1 214 57.9
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.9e-52 209.1 216 58.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.3e-52 207.6 187 60.4
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.1e-51 207.2 153 70.6
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.9e-51 206.5 205 58.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-51 206.5 227 55.5
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.9e-51 206.5 200 59.0
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.4e-51 206.1 177 65.5
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 2.1e-50 203.0 197 58.4
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.7e-50 202.6 202 59.4
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 5.6e-48 194.9 198 57.1
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.8e-46 189.9 221 53.4
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.4e-46 189.5 123 77.2
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.4e-46 189.5 210 55.2
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 5.2e-46 188.3 207 55.1
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 4.4e-45 185.3 146 66.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 9.9e-45 184.1 192 55.7
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.5e-42 175.6 154 59.1
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.3e-41 173.7 148 64.2
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.7e-41 173.3 211 50.2
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.7e-41 173.3 211 50.2
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.1e-40 170.6 125 68.0
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 3.6e-39 165.6 155 58.1
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 8.1e-39 164.5 156 56.4
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 6.9e-38 161.4 102 82.4
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 7.6e-37 157.9 120 67.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.2e-36 156.4 120 66.7
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.1e-35 154.1 214 48.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 5.1e-33 145.2 157 54.8
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.8e-31 138.7 93 73.1
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 4.8e-31 138.7 215 47.9
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.0e-29 133.3 112 58.0
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 2.6e-29 132.9 72 88.9
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.6e-29 132.9 197 42.6
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.8e-29 131.7 195 43.1
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 9.9e-29 131.0 115 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 5.4e-27 125.2 124 51.6
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.0e-25 119.4 106 53.8
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.7e-23 112.5 130 56.2
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 3.1e-22 109.4 185 42.2
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 7.6e-21 104.8 71 73.2
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.6e-18 97.1 59 78.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.6e-18 95.5 67 73.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.6e-18 95.5 67 73.1
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 7.4e-16 88.2 129 48.1
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.1e-14 82.8 152 40.1
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.3e-09 66.6 39 76.9
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 7.4e-08 61.6 108 40.7
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 1.4e-06 57.4 45 64.4


User provided reference genes

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