Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 4.3e-189 664.5 323 100.0
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 5.8e-138 494.6 331 76.4
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 3.8e-137 491.9 331 75.8
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.7e-129 466.5 305 79.0
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 4.8e-108 395.2 219 90.0
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.6e-103 380.2 329 61.7
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.6e-103 380.2 326 60.1
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 4.7e-103 378.6 333 60.7
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 3.3e-101 372.5 333 58.6
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 5.3e-99 365.2 362 55.8
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 9.1e-99 364.4 329 58.1
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 3.2e-96 355.9 332 57.5
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 5.5e-96 355.1 397 49.9
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 1.2e-95 354.0 253 71.9
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 8.0e-95 351.3 331 55.3
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.0e-94 350.9 225 74.7
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 1.4e-94 350.5 332 56.0
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.5e-93 347.1 332 56.6
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 1.5e-93 347.1 329 57.1
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 2.6e-93 346.3 331 55.0
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.4e-93 345.5 331 55.6
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 5.7e-93 345.1 332 55.7
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 5.7e-93 345.1 332 56.3
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 5.7e-93 345.1 331 55.0
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 5.7e-93 345.1 231 73.2
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 2.2e-92 343.2 329 56.2
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 4.8e-92 342.0 333 55.6
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 1.8e-91 340.1 322 57.5
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 9.1e-91 337.8 220 75.0
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 9.1e-91 337.8 331 54.1
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.6e-90 337.0 327 55.0
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.0e-90 336.7 331 54.1
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.5e-90 335.9 346 52.6
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 4.5e-90 335.5 329 55.3
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.7e-89 333.6 346 52.3
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.3e-89 333.2 351 51.9
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 6.5e-89 331.6 220 74.5
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.1e-88 330.9 237 67.5
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.1e-88 330.9 324 54.6
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 4.2e-88 328.9 243 65.4
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 5.5e-88 328.6 237 70.0
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 5.5e-88 328.6 321 52.6
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 5.5e-88 328.6 327 53.5
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.2e-87 327.4 332 54.2
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 2.1e-87 326.6 342 52.3
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 2.1e-87 326.6 328 54.0
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 2.8e-87 326.2 326 54.0
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 4.7e-87 325.5 234 67.9
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 8.0e-87 324.7 326 53.7
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.4e-86 323.9 333 54.1
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 2.3e-86 323.2 265 61.9
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 3.0e-86 322.8 331 52.9
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 4.0e-86 322.4 264 61.4
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 5.2e-86 322.0 236 67.4
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-85 320.5 329 52.9
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-85 320.5 341 51.6
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 5.7e-85 318.5 247 64.0
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 7.5e-85 318.2 332 53.0
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 7.5e-85 318.2 326 54.0
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 9.8e-85 317.8 332 53.0
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 2.8e-84 316.2 243 65.0
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 2.8e-84 316.2 328 53.7
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 2.4e-83 313.2 246 63.0
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 1.2e-82 310.8 243 63.0
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 3.5e-82 309.3 333 52.9
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 7.8e-82 308.1 318 53.8
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 1.7e-81 307.0 335 51.6
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.7e-81 307.0 328 53.7
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.1e-80 304.3 173 84.4
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 1.1e-80 304.3 335 50.1
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 1.1e-80 304.3 197 72.1
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 2.5e-80 303.1 338 50.9
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 5.6e-80 302.0 205 68.8
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.5e-77 293.9 331 50.2
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 3.4e-77 292.7 217 65.9
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 4.4e-77 292.4 219 62.6
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 7.5e-77 291.6 284 55.6
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.1e-75 287.7 359 48.2
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 1.4e-75 287.3 300 50.3
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 5.4e-75 285.4 255 60.8
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 9.2e-75 284.6 305 53.1
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 2.0e-74 283.5 332 50.0
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 8.6e-73 278.1 303 54.1
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 7.3e-72 275.0 205 68.8
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.2e-71 274.2 175 76.0
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 4.7e-71 272.3 216 62.5
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.8e-70 270.4 254 55.5
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 9.8e-69 264.6 317 48.6
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 7.0e-67 258.5 301 49.8
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 1.4e-62 244.2 171 66.7
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 3.7e-60 236.1 273 49.1
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.7e-57 227.3 289 45.3
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 3.9e-57 226.1 229 53.7
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 7.3e-56 221.9 491 33.8
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 8.1e-55 218.4 223 53.4
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 6.0e-50 202.2 224 46.9
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 2.1e-47 193.7 204 44.6
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 4.0e-46 189.5 202 51.5
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 1.5e-45 187.6 262 44.7
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 3.4e-45 186.4 156 61.5
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 4.4e-45 186.0 212 45.3
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 9.9e-45 184.9 150 62.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.9e-44 183.3 359 35.4
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 8.4e-44 181.8 267 41.9
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 3.0e-41 173.3 204 44.1
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 7.9e-34 148.7 304 36.8
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 9.9e-29 131.7 73 78.1
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 3.8e-28 129.8 138 49.3
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 1.3e-25 121.3 68 76.5
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.5e-24 117.9 205 34.1
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.5e-21 107.8 62 79.0
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.5e-13 81.3 111 49.5
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 2.0e-13 80.9 94 45.7
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 3.2e-11 73.6 52 63.5
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-09 68.2 49 67.3
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 5.1e-09 66.2 131 36.6
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 1.5e-08 64.7 168 30.4
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-07 61.2 69 46.4
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 1.7e-07 61.2 69 46.4
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 3.7e-07 60.1 61 49.2
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 3.7e-07 60.1 61 49.2
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 4.8e-07 59.7 46 60.9
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 4.8e-07 59.7 29 82.8
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 4.8e-07 59.7 69 44.9
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 4.8e-07 59.7 69 44.9
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 1.8e-06 57.8 61 49.2
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 2.4e-06 57.4 69 44.9
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.4e-06 57.4 30 76.7
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 3.1e-06 57.0 61 49.2
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 3.1e-06 57.0 61 49.2
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 4.1e-06 56.6 38 65.8
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 9.1e-06 55.5 98 37.8
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 9.1e-06 55.5 98 37.8


User provided reference genes

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