Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.5e-104 381.7 202 100.0
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.7e-90 335.1 197 88.8
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 1.7e-50 203.4 202 61.4
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 8.3e-50 201.1 202 61.4
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 2.4e-49 199.5 223 57.0
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 9.2e-49 197.6 203 57.1
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.6e-48 196.8 220 56.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.3e-47 193.7 218 54.6
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.3e-47 193.0 205 60.5
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.0e-43 179.9 211 54.5
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 9.9e-43 177.6 207 51.7
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 9.9e-43 177.6 222 53.2
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.4e-42 174.9 223 52.5
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.3e-39 167.2 221 48.4
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.5e-38 163.7 239 45.6
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.5e-38 163.7 239 45.6
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 5.6e-38 161.8 224 47.3
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.1e-36 157.5 228 46.1
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 1.4e-36 157.1 242 44.6
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.8e-36 156.8 231 45.5
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 2.4e-36 156.4 207 45.9
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 5.3e-36 155.2 255 43.5
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.2e-35 154.1 242 43.4
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 3.4e-35 152.5 231 45.9
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 3.4e-35 152.5 214 45.8
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 3.4e-35 152.5 231 44.2
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 4.4e-35 152.1 236 41.5
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 4.4e-35 152.1 236 44.5
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.8e-35 151.8 212 47.2
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 9.9e-35 151.0 216 43.5
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.7e-34 150.2 231 45.0
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 2.9e-34 149.4 191 48.7
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.9e-34 149.4 215 44.7
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.8e-34 149.1 213 46.0
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 3.8e-34 149.1 224 44.2
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 4.9e-34 148.7 251 41.4
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 6.4e-34 148.3 218 43.6
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 8.4e-34 147.9 217 43.8
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 8.4e-34 147.9 206 45.1
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 1.4e-33 147.1 214 43.5
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-33 146.4 208 45.2
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 2.4e-33 146.4 214 43.5
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 3.2e-33 146.0 197 48.2
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.2e-33 146.0 242 41.7
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.2e-33 146.0 193 45.1
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 5.4e-33 145.2 222 45.5
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 9.3e-33 144.4 134 60.4
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 9.3e-33 144.4 238 42.0
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.2e-32 144.1 232 41.8
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.2e-32 144.1 233 45.1
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.2e-32 144.1 212 46.2
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 1.2e-32 144.1 166 50.6
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 3.5e-32 142.5 209 45.5
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 7.8e-32 141.4 212 43.9
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 7.8e-32 141.4 246 38.2
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.0e-31 141.0 222 42.8
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.0e-31 141.0 222 42.8
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.0e-31 141.0 200 48.0
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.3e-31 140.6 261 42.9
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.7e-31 140.2 242 40.9
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.7e-31 140.2 252 41.7
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 2.3e-31 139.8 220 41.4
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 3.0e-31 139.4 236 41.9
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.9e-31 139.0 213 42.3
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.9e-31 139.0 227 40.5
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 6.6e-31 138.3 215 43.3
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.1e-30 137.5 208 41.8
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.5e-30 137.1 222 43.2
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 1.9e-30 136.7 245 43.7
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 3.3e-30 136.0 209 43.5
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.3e-30 135.6 218 42.7
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 5.6e-30 135.2 209 43.5
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 5.6e-30 135.2 243 41.2
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 1.3e-29 134.0 147 52.4
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.3e-29 134.0 266 41.7
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 1.6e-29 133.7 209 45.0
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 4.8e-29 132.1 240 41.2
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 4.8e-29 132.1 234 38.0
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 8.1e-29 131.3 266 38.3
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.4e-28 130.6 230 40.9
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.4e-28 130.6 225 40.0
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 2.4e-28 129.8 228 40.4
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 3.1e-28 129.4 221 42.5
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 3.1e-28 129.4 235 41.7
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 4.0e-28 129.0 200 43.0
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 4.0e-28 129.0 200 43.0
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 4.0e-28 129.0 200 45.0
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 4.0e-28 129.0 232 41.4
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 1.2e-27 127.5 229 43.2
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.2e-27 127.5 192 46.4
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.2e-27 127.5 236 39.0
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 2.0e-27 126.7 229 41.9
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 2.6e-27 126.3 194 44.8
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 2.6e-27 126.3 199 41.7
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 3.4e-27 125.9 173 46.2
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 3.4e-27 125.9 227 39.6
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 4.5e-27 125.6 232 38.8
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 5.8e-27 125.2 177 44.6
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 1.7e-26 123.6 205 41.5
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 2.9e-26 122.9 90 66.7
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 3.8e-26 122.5 259 38.2
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 4.9e-26 122.1 212 40.6
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 6.4e-26 121.7 83 68.7
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 8.4e-26 121.3 259 37.5
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.9e-25 120.2 225 40.0
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 4.2e-25 119.0 108 56.5
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 9.3e-25 117.9 257 37.4
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 9.3e-25 117.9 252 35.3
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 2.7e-24 116.3 202 41.1
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 2.7e-24 116.3 188 39.4
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 3.5e-24 115.9 86 67.4
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.5e-24 115.9 92 62.0
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 4.6e-24 115.5 212 39.2
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.6e-24 115.5 235 36.6
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.3e-23 114.0 137 48.9
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.3e-23 114.0 162 46.3
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.3e-23 113.2 197 42.6
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 8.7e-23 111.3 236 39.4
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.1e-22 110.9 91 60.4
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.6e-22 108.6 233 38.6
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.6e-22 108.6 232 35.3
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 7.4e-22 108.2 129 49.6
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 7.4e-22 108.2 233 38.6
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 9.6e-22 107.8 105 52.4
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.8e-21 106.3 181 38.7
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.8e-21 106.3 181 38.7
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 3.7e-21 105.9 84 60.7
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 3.7e-21 105.9 105 52.4
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 4.8e-21 105.5 72 68.1
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 8.1e-21 104.8 160 41.9
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 3.1e-20 102.8 93 54.8
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 4.5e-19 99.0 187 39.0
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.0e-18 97.8 175 38.3
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.7e-18 97.1 86 52.3
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.5e-17 93.2 100 50.0
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 4.2e-17 92.4 126 44.4
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 4.3e-14 82.4 80 52.5
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 9.6e-14 81.3 203 36.0
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.0e-11 73.6 80 45.0
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.4e-11 72.8 99 41.4
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 7.6e-11 71.6 145 36.6
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 5.0e-10 68.9 142 37.3
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 4.3e-06 55.8 167 32.3
Nitab4.5_0000893g0100 Nicotiana tabacum HOM05D004801 ORTHO05D005747 7.4e-06 55.1 92 45.7
MSTRG.14327 Avicennia marina HOM05D004801 ORTHO05D005747 9.7e-06 54.7 116 39.7


User provided reference genes

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