Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 0.0e+00 1255.7 642 100.0
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 0.0e+00 1192.2 642 95.5
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 0.0e+00 1120.5 642 89.9
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 0.0e+00 1103.6 642 88.3
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 0.0e+00 1102.4 644 88.4
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 0.0e+00 1088.9 620 89.5
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 5.0e-266 921.0 548 86.9
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.2e-256 889.8 639 71.8
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.2e-246 856.7 665 68.1
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.1e-244 850.1 567 75.7
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 3.2e-244 848.6 624 70.7
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 8.6e-242 840.5 620 70.3
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 1.9e-241 839.3 574 72.3
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 2.8e-240 835.5 619 69.1
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 8.1e-240 833.9 645 68.5
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 3.1e-239 832.0 564 74.3
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.4e-236 823.2 536 77.8
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 2.4e-236 822.4 618 67.6
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 3.2e-236 822.0 525 78.5
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.9e-234 815.1 615 67.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 4.3e-233 811.6 620 67.6
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 5.6e-233 811.2 615 67.5
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.2e-232 810.1 642 64.8
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 1.6e-232 809.7 614 67.4
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 8.1e-232 807.4 661 64.6
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 2.4e-231 805.8 619 68.0
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 2.6e-230 802.4 619 66.9
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 7.6e-230 800.8 610 66.9
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 7.6e-230 800.8 610 66.9
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 6.4e-229 797.7 621 66.5
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 6.4e-229 797.7 664 63.3
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-228 796.2 622 66.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 3.2e-228 795.4 620 66.0
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 4.2e-228 795.0 619 67.0
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 5.4e-228 794.7 635 65.8
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 2.7e-227 792.3 617 64.7
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 7.8e-227 790.8 613 67.0
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 3.0e-226 788.9 609 66.5
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.9e-225 786.2 659 64.8
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.2e-221 772.7 611 65.3
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 2.9e-221 772.3 638 65.4
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.4e-220 769.2 619 65.8
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 5.4e-220 768.1 625 63.2
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.2e-219 766.9 619 65.8
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.1e-219 766.1 624 65.4
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 2.1e-219 766.1 619 64.3
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 2.1e-219 766.1 633 64.1
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 5.6e-217 758.1 607 64.6
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 7.4e-217 757.7 626 64.5
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 4.8e-216 755.0 619 63.5
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 3.1e-215 752.3 614 64.2
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 6.9e-215 751.1 650 60.8
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.5e-214 750.0 601 64.6
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 4.5e-214 748.4 619 62.2
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.9e-213 745.7 606 64.9
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 4.9e-213 745.0 574 66.4
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.2e-212 741.9 617 60.6
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.2e-211 740.3 617 61.3
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.6e-211 740.0 644 59.9
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 1.0e-210 737.3 608 64.6
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 1.1e-209 733.8 625 60.8
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 5.6e-209 731.5 644 58.5
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 2.1e-208 729.6 580 64.0
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 8.1e-208 727.6 621 62.8
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 5.3e-207 724.9 618 61.8
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.3e-205 720.3 604 62.9
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 6.5e-205 718.0 567 65.8
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 6.5e-205 718.0 623 60.5
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 8.4e-205 717.6 621 60.9
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.9e-204 716.5 644 58.5
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.0e-202 710.7 645 58.1
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.4e-199 700.3 615 62.1
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 8.5e-197 691.0 621 58.6
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 4.2e-196 688.7 620 59.5
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 7.2e-196 688.0 636 58.8
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.2e-195 687.2 616 60.2
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 2.3e-194 682.9 645 56.6
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 6.9e-191 671.4 512 64.6
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 2.2e-189 666.4 629 57.1
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 5.5e-188 661.8 623 57.5
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 7.9e-187 657.9 643 55.4
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 8.8e-186 654.4 643 55.1
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 8.5e-181 637.9 645 54.1
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.2e-180 636.0 455 71.4
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 7.2e-180 634.8 645 53.5
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 6.1e-179 631.7 615 55.3
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 1.4e-175 620.5 643 53.0
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 1.9e-172 610.1 507 62.9
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 2.9e-165 586.3 462 65.4
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 2.6e-161 573.2 615 51.1
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 2.8e-160 569.7 618 52.8
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 3.1e-159 566.2 448 65.2
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.1e-155 552.0 520 56.7
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 3.8e-149 532.7 630 48.9
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 2.3e-146 523.5 614 48.5
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.2e-142 511.1 621 47.2
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 5.0e-141 505.8 618 47.1
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 4.4e-137 492.7 316 78.8
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 9.8e-137 491.5 353 70.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.9e-135 487.3 636 44.0
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.2e-135 485.0 399 63.2
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.1e-132 478.0 358 68.4
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 6.8e-130 468.8 370 65.9
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.8e-126 455.3 332 67.8
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.7e-125 454.1 506 52.2
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.7e-102 377.1 524 44.1
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 1.3e-83 315.1 262 62.2
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 5.3e-82 309.7 320 55.0
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-78 297.7 206 70.4
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 5.9e-73 279.6 350 46.6
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-69 268.5 206 65.0
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-69 267.7 191 67.5
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 9.1e-66 255.8 283 53.0
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-63 248.1 208 62.0
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 6.7e-61 239.6 162 74.7
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.0e-60 238.0 195 64.6
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 7.2e-55 219.5 174 63.8
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.2e-49 202.2 161 67.7
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.7e-49 201.1 161 67.1
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.4e-45 188.7 164 57.3
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.4e-44 183.7 123 71.5
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.5e-39 168.7 153 57.5
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.4e-36 157.5 252 40.9
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 7.5e-36 156.4 309 40.1
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.8e-34 151.8 109 69.7
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.6e-32 143.3 102 63.7
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.5e-31 139.4 92 71.7
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 1.6e-30 138.7 169 50.9
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 8.9e-29 132.9 177 45.2
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.5e-28 129.8 96 65.6
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 8.3e-27 126.3 71 84.5
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-24 118.6 80 73.8
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 3.9e-24 117.5 89 66.3
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.8e-22 111.3 79 67.1
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 6.4e-19 100.1 89 61.8
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 4.6e-17 94.0 63 66.7
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.0e-16 92.8 82 54.9
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 3.7e-11 74.3 58 63.8
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 4.1e-10 70.9 39 79.5
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 5.4e-10 70.5 46 65.2
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 2.1e-09 68.6 46 63.0
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 2.1e-09 68.6 46 63.0


User provided reference genes

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