Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 0.0e+00 1162.9 593 100.0
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 5.3e-254 880.9 511 89.4
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.2e-224 783.5 479 84.8
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 7.5e-224 780.8 474 85.9
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 1.1e-222 776.9 479 84.3
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 5.2e-217 758.1 480 83.3
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 4.3e-211 738.4 516 76.7
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.7e-175 620.2 451 72.3
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.2e-175 619.8 478 67.8
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 6.4e-175 618.2 479 68.1
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 7.9e-173 611.3 474 67.9
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.3e-171 605.9 479 67.2
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 5.6e-171 605.1 491 64.8
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.2e-168 597.4 473 68.1
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 7.6e-168 594.7 479 64.9
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 7.6e-168 594.7 478 64.9
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 8.4e-167 591.3 473 66.2
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.9e-166 590.1 489 64.8
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 7.1e-166 588.2 479 65.1
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.6e-165 587.0 521 62.8
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-163 580.9 474 65.8
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.5e-163 579.7 485 63.7
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.5e-163 579.7 478 63.2
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.6e-162 577.0 474 65.2
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.1e-162 576.6 474 65.4
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 6.2e-162 575.1 474 65.6
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 3.1e-161 572.8 466 65.9
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 4.0e-161 572.4 479 63.0
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 5.3e-161 572.0 478 62.3
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 5.8e-160 568.5 474 63.5
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 5.8e-160 568.5 479 63.7
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 7.6e-160 568.2 474 65.0
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.2e-159 566.6 479 63.9
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.9e-159 566.2 474 64.6
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 3.8e-159 565.8 479 64.1
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 4.9e-159 565.5 479 63.7
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.5e-159 565.1 478 64.2
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 4.2e-158 562.4 480 64.0
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 7.1e-158 561.6 478 62.6
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 9.3e-158 561.2 474 63.9
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.6e-157 560.5 478 62.1
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 3.5e-157 559.3 481 61.7
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 2.3e-156 556.6 480 62.1
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 2.3e-156 556.6 496 62.3
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 6.7e-156 555.1 474 63.1
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.3e-154 550.8 473 62.2
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 2.2e-154 550.1 487 62.6
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 6.3e-154 548.5 473 61.9
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.4e-153 547.4 485 61.2
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 3.1e-153 546.2 487 62.6
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 9.0e-153 544.7 474 62.2
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 5.9e-152 542.0 474 62.4
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 6.5e-151 538.5 489 60.7
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 8.5e-151 538.1 475 61.7
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 4.2e-150 535.8 479 63.0
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 5.5e-150 535.4 474 59.9
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.2e-149 534.3 499 60.1
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 2.1e-149 533.5 473 59.8
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.4e-148 530.8 480 60.6
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 2.8e-146 523.1 475 58.9
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 3.7e-146 522.7 485 57.5
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 1.4e-145 520.8 477 60.2
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 4.1e-145 519.2 474 60.1
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.2e-141 507.7 523 56.4
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.0e-140 504.6 485 59.0
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 1.8e-140 503.8 490 56.5
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 5.7e-139 498.8 470 58.7
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 6.3e-138 495.4 480 57.5
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 5.0e-135 485.7 446 59.9
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.6e-133 480.7 478 57.3
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 5.2e-132 475.7 493 58.2
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.5e-131 474.2 502 53.6
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 2.0e-131 473.8 499 54.9
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 4.4e-131 472.6 493 53.1
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 4.8e-130 469.2 495 58.0
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 1.7e-127 460.7 482 52.5
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 9.4e-126 454.9 441 58.3
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.7e-125 452.6 472 55.3
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 1.0e-124 451.4 372 66.1
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 6.7e-124 448.7 555 50.3
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 5.7e-123 445.7 491 54.2
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 7.5e-123 445.3 373 64.3
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 7.5e-123 445.3 483 54.2
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.7e-122 444.1 555 50.1
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 2.8e-122 443.4 491 53.2
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.1e-121 441.4 486 54.1
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.4e-121 440.3 491 53.8
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 2.4e-121 440.3 480 52.5
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 4.1e-121 439.5 483 53.8
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 7.0e-121 438.7 374 63.6
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 1.3e-119 434.5 493 50.9
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.7e-119 434.1 465 53.5
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 5.0e-119 432.6 521 51.8
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 6.5e-119 432.2 484 53.7
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 1.9e-118 430.6 542 49.1
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.3e-114 417.9 480 54.0
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 4.8e-114 416.0 500 51.0
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.1e-113 414.8 495 50.5
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 7.0e-113 412.1 498 50.4
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 6.6e-111 405.6 504 49.0
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 8.6e-111 405.2 548 46.7
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-109 401.4 500 49.6
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 2.8e-109 400.2 502 51.0
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.0e-108 398.3 501 48.3
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.7e-106 389.8 329 64.7
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 2.1e-93 347.4 255 74.5
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 5.4e-89 332.8 325 55.7
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 3.8e-74 283.5 377 44.3
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 8.1e-69 265.8 220 63.6
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.1e-68 265.4 220 63.6
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.5e-67 261.5 214 64.5
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 2.6e-67 260.8 265 56.6
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 5.8e-67 259.6 174 74.7
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 6.4e-66 256.1 236 59.7
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 3.2e-65 253.8 265 55.8
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.8e-60 238.0 510 35.7
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.2e-49 200.7 352 38.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 7.1e-49 199.5 487 33.9
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 7.4e-46 189.5 448 35.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.7e-42 178.3 425 35.5
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.1e-38 165.6 469 32.8
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 4.3e-38 163.7 185 50.3
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 5.7e-38 163.3 443 32.1
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.2e-37 161.4 478 28.5
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 3.2e-33 147.5 128 61.7
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 6.1e-32 143.3 499 28.9
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.5e-30 138.7 122 61.5
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 5.9e-27 126.7 469 26.9
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 5.9e-27 126.7 143 51.0
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 9.4e-17 92.8 80 61.2
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 6.1e-16 90.1 106 48.1
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 4.5e-11 73.9 41 80.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 6.8e-07 60.1 123 33.3


User provided reference genes

Program Settings