Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.0e-229 800.0 500 100.0
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.0e-210 734.9 499 94.6
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 4.9e-160 568.5 539 75.3
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.1e-154 550.8 519 73.8
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 6.2e-147 525.0 577 67.8
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 5.3e-146 521.9 577 67.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 6.9e-130 468.4 373 75.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.6e-126 456.1 464 62.3
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 5.7e-124 448.7 478 60.3
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.1e-122 442.6 473 60.7
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.6e-105 387.5 474 56.3
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.7e-99 367.5 443 55.3
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.9e-83 313.5 509 47.9
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.1e-78 297.4 485 46.0
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.3e-77 293.9 516 43.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.2e-77 292.7 508 44.1
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.4e-76 290.0 478 43.7
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.2e-75 287.3 476 45.0
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.9e-75 287.0 473 43.3
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.1e-74 285.0 339 58.7
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.2e-74 282.0 471 43.3
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.8e-70 270.4 482 44.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.1e-69 268.5 460 42.2
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.0e-68 264.2 530 40.9
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 7.6e-68 262.3 537 41.0
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 9.9e-68 261.9 517 42.7
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.7e-65 253.8 446 41.9
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.6e-65 253.1 468 42.1
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.1e-63 248.4 501 42.1
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 9.6e-63 245.4 517 42.4
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.6e-62 244.6 506 41.7
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 8.1e-62 242.3 487 39.4
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 2.0e-60 237.7 433 40.4
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 4.9e-59 233.0 531 37.5
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.4e-58 231.5 470 38.7
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.1e-57 227.6 398 43.0
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.0e-56 225.3 503 38.2
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.7e-56 224.6 520 39.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.7e-56 224.6 520 39.2
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 3.0e-56 223.8 446 37.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.9e-56 223.4 471 39.1
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.5e-55 221.5 338 45.3
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.6e-55 219.5 515 38.1
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.8e-54 217.2 396 41.7
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.8e-54 217.2 522 37.9
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.6e-54 216.9 481 39.9
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 4.8e-54 216.5 512 41.2
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 4.8e-54 216.5 512 41.2
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.1e-53 215.3 455 38.2
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.4e-53 214.9 511 40.3
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.0e-53 213.4 498 37.8
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 9.0e-53 212.2 437 36.8
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.0e-53 212.2 477 38.6
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.0e-52 211.1 280 47.5
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 5.8e-52 209.5 466 38.6
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 4.9e-51 206.5 498 38.4
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.1e-50 205.3 538 37.2
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.9e-50 204.5 447 37.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.6e-49 201.4 537 36.1
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.3e-48 197.6 459 36.4
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 5.1e-48 196.4 374 42.5
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 6.6e-48 196.1 573 35.6
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.3e-47 193.4 434 36.9
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 5.6e-47 193.0 555 33.9
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 7.3e-47 192.6 581 34.8
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 9.6e-47 192.2 486 36.8
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 3.6e-46 190.3 431 35.3
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 6.2e-46 189.5 360 41.4
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.4e-45 188.3 461 37.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.4e-45 188.3 538 33.6
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 3.1e-45 187.2 534 36.5
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 3.1e-45 187.2 438 41.1
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 6.9e-45 186.0 548 31.8
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.2e-44 185.3 463 35.6
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 2.6e-44 184.1 518 35.3
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 4.9e-43 179.9 496 35.7
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.4e-42 178.3 354 44.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.4e-42 177.6 501 35.5
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 3.2e-42 177.2 578 30.4
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.2e-42 176.8 470 34.5
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 9.3e-42 175.6 579 30.2
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 9.3e-42 175.6 280 42.5
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.2e-41 175.3 437 35.9
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.5e-41 173.7 479 34.7
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 3.5e-41 173.7 466 33.5
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.0e-41 172.9 515 37.5
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.0e-40 172.2 437 35.5
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.3e-40 171.8 542 32.7
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.3e-40 171.0 444 33.3
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.3e-40 171.0 545 30.8
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-39 168.7 447 34.0
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-39 168.7 447 34.0
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.1e-39 168.7 525 34.9
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-39 168.7 276 43.5
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.3e-39 166.8 281 43.4
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.4e-39 166.0 497 34.4
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.1e-38 164.5 656 28.0
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 4.8e-38 163.3 481 37.2
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 6.2e-38 162.9 512 33.4
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 8.1e-38 162.5 461 32.1
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 3.1e-37 160.6 514 37.5
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 5.3e-37 159.8 395 39.2
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 6.9e-37 159.5 492 32.9
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 9.0e-37 159.1 453 33.8
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.2e-36 158.7 516 35.7
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.4e-36 157.1 516 37.6
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 7.6e-36 156.0 586 32.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.2e-35 154.5 605 31.9
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.2e-35 154.5 605 31.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 4.9e-35 153.3 567 33.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 6.5e-35 152.9 510 33.9
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 8.4e-35 152.5 449 32.3
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.1e-34 152.1 538 32.5
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.6e-33 146.7 456 31.8
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.0e-32 145.6 506 31.4
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 6.7e-32 142.9 470 31.7
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.5e-31 141.0 589 32.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 5.7e-31 139.8 603 30.7
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.6e-30 138.3 544 31.6
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.1e-30 137.9 627 30.3
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 2.1e-30 137.9 589 31.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 8.2e-30 136.0 591 30.5
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.4e-29 135.2 596 30.4
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 9.0e-29 132.5 472 29.2
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-28 132.1 476 32.6
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 5.0e-27 126.7 272 39.7
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.4e-26 125.2 167 46.1
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.2e-26 124.0 409 32.0
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 4.2e-26 123.6 513 28.8
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 7.9e-25 119.4 508 33.9
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.3e-24 118.6 463 28.9
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.0e-24 117.5 477 32.7
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 6.7e-24 116.3 450 32.2
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.5e-23 115.2 520 30.6
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.9e-23 114.8 455 32.5
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.5e-23 114.4 485 30.7
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.6e-22 111.7 627 28.5
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.8e-22 110.2 538 34.2
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 6.9e-21 106.3 497 29.4
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.4e-18 98.6 439 29.2
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.4e-18 98.6 515 33.8
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.2e-18 97.1 172 48.8
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.1e-17 94.7 463 27.6
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.7e-17 94.4 527 25.2
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 6.7e-16 89.7 473 27.7
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 6.7e-16 89.7 168 40.5
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 6.7e-16 89.7 175 44.0
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 6.7e-16 89.7 135 43.7
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 3.3e-15 87.4 525 25.5
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 4.3e-15 87.0 469 28.8
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 5.7e-15 86.7 208 37.5
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.7e-14 85.1 469 29.0
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.2e-14 84.7 89 64.0
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 6.9e-13 79.7 194 37.6
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.2e-12 79.0 136 42.6
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 7.7e-12 76.3 476 27.7
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 3.8e-11 73.9 467 28.3
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.5e-10 71.2 461 28.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 4.2e-10 70.5 106 50.9
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 7.2e-10 69.7 439 26.0
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.6e-09 68.6 254 29.1
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 7.9e-09 66.2 59 61.0
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.0e-08 65.9 441 25.2
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.3e-08 64.7 80 47.5
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 5.1e-08 63.5 469 28.6
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 2.0e-07 61.6 427 25.1
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.8e-06 57.0 461 24.7
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 6.3e-06 56.6 50 58.0
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 8.2e-06 56.2 83 44.6
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 8.2e-06 56.2 410 26.6


User provided reference genes

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