Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 2231.4 1118 100.0
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 2064.3 1170 90.7
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1780.0 1088 83.5
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1752.6 1084 82.5
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1741.5 1084 82.1
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1613.2 1083 77.5
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1243.0 1107 60.3
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1187.9 1122 58.5
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1186.4 1118 58.0
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1186.0 1102 58.3
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1182.5 1094 59.0
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1176.4 1135 57.2
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1159.4 1105 57.4
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1155.2 1114 57.7
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1154.4 1092 57.5
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1152.1 1104 57.3
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1151.7 1095 57.4
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1151.3 1108 56.7
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1142.5 1088 57.7
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1142.5 1109 56.6
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1141.3 1093 56.7
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1134.4 1103 57.2
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1132.5 1091 56.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1131.7 1094 56.9
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1126.3 1099 56.2
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1120.1 1193 53.2
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1117.4 1086 56.8
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1117.1 1199 52.7
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1114.8 1084 56.5
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1111.7 1103 55.7
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1108.2 1051 57.9
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1105.9 1114 55.2
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1105.5 1086 56.6
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1105.1 1086 56.6
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1102.8 1073 56.9
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1101.7 1191 52.6
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1098.2 1151 53.8
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1094.7 1120 54.0
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1093.2 1087 56.1
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1088.6 1109 54.4
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1086.2 1090 54.8
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1085.5 1148 53.4
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1078.9 1103 53.1
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1078.2 1094 53.4
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 1.5e-311 1072.8 1115 53.3
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 2.4e-308 1062.4 1097 54.7
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 3.2e-308 1062.0 1109 53.9
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 7.1e-308 1060.8 1094 53.0
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 1.2e-307 1060.1 1110 53.2
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 2.7e-307 1058.9 1084 53.3
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 6.0e-307 1057.7 1082 52.9
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 1.3e-306 1056.6 1080 54.2
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 2.3e-306 1055.8 1091 53.2
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 6.6e-306 1054.3 1109 53.4
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 8.6e-306 1053.9 1104 53.2
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 8.6e-306 1053.9 1090 52.8
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 1.1e-305 1053.5 1098 53.1
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 1.9e-305 1052.7 1091 53.2
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 3.3e-305 1052.0 1090 54.2
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 4.3e-305 1051.6 1086 53.8
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 7.3e-305 1050.8 1090 53.1
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 1.1e-303 1047.0 1087 52.3
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 3.1e-303 1045.4 1109 52.8
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 5.8e-302 1041.2 1052 55.4
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 4.9e-301 1038.1 1098 52.3
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 7.1e-300 1034.2 1117 52.3
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 7.1e-300 1034.2 1117 52.3
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 1.2e-299 1033.5 1015 55.6
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 1.6e-299 1033.1 1084 52.9
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 1.6e-299 1033.1 1086 52.9
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 2.7e-299 1032.3 1093 52.7
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 6.0e-299 1031.2 1102 52.5
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 6.0e-299 1031.2 1102 52.5
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 6.0e-299 1031.2 1102 52.5
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 7.8e-299 1030.8 1078 52.5
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 5.6e-297 1024.6 1084 52.4
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 6.2e-296 1021.1 1075 53.2
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 2.4e-295 1019.2 1093 51.8
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 4.4e-294 1015.0 1114 53.1
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 3.2e-292 1008.8 1007 56.0
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 5.5e-284 981.5 1155 48.9
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 1.2e-283 980.3 1105 51.4
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 3.5e-283 978.8 1094 51.0
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 1.3e-282 976.9 1070 51.7
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 8.7e-282 974.2 1084 50.4
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 1.6e-280 969.9 1062 51.2
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 1.6e-280 969.9 1064 51.2
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 2.6e-278 962.6 1086 50.1
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 3.3e-273 945.7 1086 50.3
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 4.8e-272 941.8 1143 47.8
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 7.6e-270 934.5 1107 48.9
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 4.2e-268 928.7 1045 49.6
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 5.1e-258 895.2 992 51.1
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 2.2e-253 879.8 998 49.7
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 9.1e-231 804.7 1010 46.8
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 1.9e-191 674.1 1070 39.3
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 9.3e-183 645.2 485 68.5
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.7e-181 641.0 485 70.3
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 4.4e-140 503.4 1053 34.0
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 3.8e-128 463.8 534 48.1
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 9.2e-106 389.4 563 42.1
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 3.5e-105 387.5 475 46.1
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.2e-92 345.9 615 36.1
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.7e-88 332.0 361 48.8
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 9.0e-45 186.8 177 61.6
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 3.7e-30 138.3 109 59.6
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 2.1e-25 122.5 93 61.3
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 9.7e-23 113.6 87 65.5
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 9.7e-23 113.6 87 65.5
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 2.2e-22 112.5 81 67.9
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 2.6e-15 89.0 52 75.0
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.3e-14 84.3 54 66.7
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.7e-11 76.3 47 61.7
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 7.5e-07 60.8 72 50.0


User provided reference genes

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