Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 5.8e-50 200.7 108 100.0
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 4.5e-26 121.3 119 69.7
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.0e-25 120.2 119 70.6
Nitab4.5_0000772g0110 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.5e-24 115.5 102 74.5
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 4.7e-23 111.3 92 71.7
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 6.7e-22 107.5 119 63.9
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 1.3e-20 103.2 115 60.0
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 3.1e-19 98.6 111 61.3
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 8.5e-17 90.5 87 63.2
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 8.5e-17 90.5 115 62.6
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 1.5e-13 79.7 111 51.4
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 2.6e-13 79.0 87 56.3
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 3.3e-13 78.6 103 50.5
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 1.7e-12 76.3 103 51.5
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 1.7e-12 76.3 100 49.0
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 4.8e-12 74.7 89 55.1
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 6.3e-12 74.3 101 49.5
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 1.1e-11 73.6 102 50.0
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 4.1e-11 71.6 65 61.5
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 7.0e-11 70.9 87 51.7
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 7.0e-11 70.9 79 51.9
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 9.1e-11 70.5 105 44.8
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 1.2e-10 70.1 90 50.0
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 1.2e-10 70.1 100 49.0
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 2.0e-10 69.3 92 47.8
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 2.0e-10 69.3 105 49.5
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 2.0e-10 69.3 98 44.9
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 2.6e-10 68.9 107 46.7
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 2.6e-10 68.9 58 63.8
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 3.5e-10 68.6 58 62.1
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 4.5e-10 68.2 104 44.2
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 4.5e-10 68.2 105 45.7
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 5.9e-10 67.8 88 48.9
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 5.9e-10 67.8 98 44.9
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 7.7e-10 67.4 99 46.5
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 7.7e-10 67.4 92 50.0
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 7.7e-10 67.4 82 47.6
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.0e-09 67.0 105 45.7
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 1.0e-09 67.0 101 49.5
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 1.0e-09 67.0 96 46.9
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 1.0e-09 67.0 96 46.9
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 1.3e-09 66.6 105 44.8
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.3e-09 66.6 101 46.5
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 1.7e-09 66.2 111 43.2
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 2.2e-09 65.9 53 66.0
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 2.2e-09 65.9 58 60.3
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 2.2e-09 65.9 107 44.9
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 2.2e-09 65.9 86 48.8
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 2.2e-09 65.9 101 44.6
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 2.2e-09 65.9 109 44.0
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 2.9e-09 65.5 93 50.5
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 2.9e-09 65.5 100 47.0
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 3.8e-09 65.1 59 57.6
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 5.0e-09 64.7 58 62.1
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 5.0e-09 64.7 72 55.6
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 5.0e-09 64.7 100 47.0
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 5.0e-09 64.7 74 51.4
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 5.0e-09 64.7 74 51.4
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 6.5e-09 64.3 97 46.4
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 6.5e-09 64.3 86 47.7
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 8.5e-09 63.9 98 48.0
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 8.5e-09 63.9 52 65.4
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 8.5e-09 63.9 106 44.3
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 8.5e-09 63.9 96 42.7
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 1.1e-08 63.5 111 44.1
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.1e-08 63.5 112 46.4
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 1.1e-08 63.5 100 45.0
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 1.1e-08 63.5 94 47.9
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 1.1e-08 63.5 77 50.6
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 1.1e-08 63.5 99 46.5
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 1.5e-08 63.2 111 45.0
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.5e-08 63.2 102 43.1
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 1.9e-08 62.8 60 58.3
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.9e-08 62.8 83 45.8
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 2.5e-08 62.4 97 42.3
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 2.5e-08 62.4 48 68.8
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 3.2e-08 62.0 47 70.2
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 3.2e-08 62.0 96 45.8
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 3.2e-08 62.0 95 44.2
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 3.2e-08 62.0 105 42.9
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 4.2e-08 61.6 111 44.1
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 4.2e-08 61.6 79 46.8
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 4.2e-08 61.6 79 46.8
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 4.2e-08 61.6 79 46.8
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 4.2e-08 61.6 79 46.8
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 4.2e-08 61.6 79 46.8
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 4.2e-08 61.6 98 46.9
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 4.2e-08 61.6 106 41.5
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.2e-08 61.6 106 41.5
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.2e-08 61.6 106 41.5
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.2e-08 61.6 106 41.5
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 4.2e-08 61.6 102 44.1
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 4.2e-08 61.6 94 43.6
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 5.5e-08 61.2 99 47.5
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 5.5e-08 61.2 111 40.5
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 5.5e-08 61.2 49 65.3
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 5.5e-08 61.2 109 40.4
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 7.2e-08 60.8 109 41.3
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 7.2e-08 60.8 93 44.1
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 7.2e-08 60.8 62 56.5
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 7.2e-08 60.8 46 69.6
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 9.4e-08 60.5 113 42.5
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 9.4e-08 60.5 113 42.5
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 9.4e-08 60.5 112 44.6
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 9.4e-08 60.5 47 68.1
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 1.2e-07 60.1 96 42.7
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 1.2e-07 60.1 46 69.6
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.2e-07 60.1 89 48.3
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 1.6e-07 59.7 96 43.8
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 2.1e-07 59.3 90 45.6
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 2.1e-07 59.3 95 45.3
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 2.1e-07 59.3 49 61.2
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 2.1e-07 59.3 95 45.3
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 2.1e-07 59.3 95 45.3
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 2.1e-07 59.3 97 42.3
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 2.1e-07 59.3 109 45.0
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 2.7e-07 58.9 98 45.9
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 2.7e-07 58.9 112 40.2
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.7e-07 58.9 48 66.7
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 3.6e-07 58.5 100 42.0
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 3.6e-07 58.5 97 42.3
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 4.7e-07 58.2 91 44.0
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 4.7e-07 58.2 91 42.9
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 4.7e-07 58.2 102 42.2
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 6.1e-07 57.8 95 40.0
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 8.0e-07 57.4 49 57.1
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 8.0e-07 57.4 114 42.1
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 8.0e-07 57.4 114 42.1
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 8.0e-07 57.4 97 43.3
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 8.0e-07 57.4 114 45.6
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 1.0e-06 57.0 47 66.0
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 1.0e-06 57.0 79 45.6
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-06 56.6 97 40.2
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 1.4e-06 56.6 112 36.6
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 1.8e-06 56.2 104 45.2
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 1.8e-06 56.2 55 54.5
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 2.3e-06 55.8 97 39.2
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 2.3e-06 55.8 97 39.2
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 2.3e-06 55.8 97 39.2
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 3.0e-06 55.5 115 40.0
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 3.0e-06 55.5 91 44.0
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 4.0e-06 55.1 105 41.9
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 4.0e-06 55.1 101 40.6
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 4.0e-06 55.1 90 41.1
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 6.7e-06 54.3 101 40.6
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 6.7e-06 54.3 101 41.6
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 8.8e-06 53.9 107 42.1
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 8.8e-06 53.9 104 40.4


User provided reference genes

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