Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.9e-127 459.1 228 100.0
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.0e-120 435.3 229 94.3
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.9e-107 392.1 237 83.1
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 6.4e-107 391.0 237 83.1
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.4e-106 389.0 237 81.9
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 8.7e-104 380.6 231 80.1
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 4.6e-97 358.2 216 82.9
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 7.6e-92 340.9 228 71.9
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.3e-91 340.1 226 73.5
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 2.2e-91 339.3 226 72.6
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.9e-91 339.0 229 70.7
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 4.9e-91 338.2 226 73.5
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 6.4e-91 337.8 228 71.5
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 6.4e-91 337.8 226 73.9
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.6e-89 333.2 226 70.4
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.6e-89 333.2 226 71.2
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 1.6e-89 333.2 225 70.2
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.1e-89 332.8 226 71.2
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 2.7e-89 332.4 226 70.8
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.7e-89 332.4 226 72.1
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 7.9e-89 330.9 227 68.3
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.8e-88 329.7 226 69.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.3e-88 329.3 226 70.8
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 3.0e-88 328.9 225 70.2
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.1e-87 327.0 228 69.3
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.9e-87 326.2 223 69.1
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.3e-87 325.5 228 67.5
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 3.3e-87 325.5 223 70.9
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 7.4e-87 324.3 229 68.6
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 9.6e-87 323.9 222 68.9
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 1.3e-86 323.6 230 67.8
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 2.1e-86 322.8 226 69.5
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 2.8e-86 322.4 228 68.4
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 3.7e-86 322.0 214 71.0
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 8.2e-86 320.9 223 68.2
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.1e-85 320.5 223 68.2
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 2.4e-85 319.3 224 68.3
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 3.1e-85 318.9 225 68.9
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 4.0e-85 318.5 221 67.0
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 4.0e-85 318.5 221 70.6
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.0e-85 318.5 226 68.1
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 9.0e-85 317.4 229 65.1
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 1.2e-84 317.0 228 67.5
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.5e-84 316.6 226 67.3
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.5e-84 316.6 226 67.3
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 2.0e-84 316.2 223 67.7
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.6e-84 315.8 228 64.5
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.6e-84 315.8 225 68.0
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.6e-84 315.8 228 66.7
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 3.4e-84 315.5 223 67.3
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.4e-84 315.5 228 65.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 5.8e-84 314.7 229 63.8
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 5.8e-84 314.7 229 68.1
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 5.8e-84 314.7 228 66.2
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.3e-83 313.5 219 68.0
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.7e-83 313.2 221 65.6
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.8e-83 312.0 225 67.1
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 3.8e-83 312.0 249 64.3
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 4.9e-83 311.6 229 62.9
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 4.9e-83 311.6 222 67.1
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 4.9e-83 311.6 224 65.6
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.9e-83 311.6 226 66.8
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.5e-83 311.2 228 62.7
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 8.4e-83 310.8 214 68.7
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.1e-82 310.5 228 62.7
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.9e-82 309.7 221 64.7
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.9e-82 309.7 226 66.4
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.5e-82 309.3 218 67.4
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 3.2e-82 308.9 226 65.5
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 3.2e-82 308.9 226 65.5
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 3.2e-82 308.9 221 67.9
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.2e-82 308.9 228 66.2
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 7.1e-82 307.8 221 66.5
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.1e-81 306.2 226 65.5
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 2.7e-81 305.8 225 64.0
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.0e-80 303.9 227 61.7
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.0e-80 303.9 226 65.0
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.8e-80 303.1 227 62.1
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 2.3e-80 302.8 227 61.2
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.0e-80 302.4 227 61.2
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 8.7e-80 300.8 227 61.2
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 8.7e-80 300.8 216 68.5
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.1e-79 300.4 221 66.1
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.1e-79 300.4 223 65.0
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 2.5e-79 299.3 227 61.2
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 2.5e-79 299.3 227 62.6
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 2.5e-79 299.3 227 62.6
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.3e-78 297.0 217 65.0
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.6e-78 296.6 227 59.9
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.8e-78 295.8 226 63.7
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.1e-77 293.9 222 62.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.8e-77 293.1 226 65.0
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 2.4e-77 292.7 220 64.1
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 3.1e-77 292.4 223 62.8
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 5.3e-77 291.6 225 64.0
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 6.9e-77 291.2 229 61.6
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.5e-76 290.0 220 60.9
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.0e-76 289.7 228 63.2
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 3.4e-76 288.9 220 60.9
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.9e-75 285.8 220 62.3
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 1.9e-74 283.1 228 61.0
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 2.5e-74 282.7 327 47.7
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.5e-74 282.7 220 61.4
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 4.2e-74 282.0 218 61.5
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.5e-74 281.6 220 61.4
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 5.5e-74 281.6 214 63.1
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 9.4e-74 280.8 218 61.5
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.2e-73 280.4 228 61.8
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 4.6e-73 278.5 220 60.5
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 7.9e-73 277.7 220 57.3
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.4e-72 276.9 220 60.0
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.3e-72 276.2 220 60.5
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 2.5e-71 272.7 221 57.5
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 9.7e-71 270.8 221 57.5
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 1.7e-70 270.0 226 55.3
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 2.2e-70 269.6 220 58.2
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 6.3e-70 268.1 316 45.9
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 2.9e-67 259.2 358 42.7
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.2e-66 255.4 221 53.8
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.7e-65 252.7 213 55.9
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 4.7e-65 251.9 218 52.8
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.2e-62 243.0 153 73.9
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 4.8e-62 241.9 175 65.1
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 6.3e-62 241.5 226 54.4
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 3.2e-58 229.2 153 68.0
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 6.7e-56 221.5 152 66.4
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.6e-52 210.3 145 71.7
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.6e-52 209.5 176 56.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 4.5e-52 208.8 152 63.2
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 1.9e-50 203.4 168 59.5
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 7.2e-50 201.4 130 75.4
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 5.7e-47 191.8 125 71.2
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 3.7e-46 189.1 227 49.3
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 7.7e-44 181.4 225 45.8
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 3.8e-43 179.1 107 74.8
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.4e-40 170.6 111 70.3
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.4e-40 170.6 111 70.3
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 9.8e-39 164.5 99 72.7
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.7e-38 163.7 122 63.9
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.4e-37 160.6 116 67.2
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 5.4e-37 158.7 95 75.8
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.6e-33 147.1 194 36.6
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 2.8e-33 146.4 117 64.1
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-31 140.6 118 61.9
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.0e-31 140.2 120 56.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 5.4e-29 132.1 87 73.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.7e-25 119.0 107 56.1
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 9.2e-21 104.8 81 65.4
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.3e-19 100.9 129 46.5
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 7.5e-15 85.1 57 73.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 6.4e-14 82.0 83 49.4
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 6.6e-11 72.0 61 57.4
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 4.9e-06 55.8 48 56.2


User provided reference genes

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