Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 4.4e-46 187.6 93 100.0
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.2e-35 152.9 93 83.9
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.0e-35 152.1 97 80.4
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 3.9e-34 147.9 93 83.9
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 4.7e-32 141.0 98 75.5
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 6.8e-31 137.1 98 76.5
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 4.4e-30 134.4 97 75.3
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 1.3e-29 132.9 98 73.5
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 1.2e-19 99.8 92 55.4
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 6.0e-19 97.4 99 54.5
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 6.0e-19 97.4 90 54.4
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 6.0e-19 97.4 97 54.6
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 1.0e-18 96.7 94 52.1
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 2.3e-18 95.5 89 52.8
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 3.9e-18 94.7 90 55.6
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 5.1e-18 94.4 92 53.3
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 8.6e-18 93.6 89 56.2
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 1.1e-17 93.2 101 53.5
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 1.1e-17 93.2 91 54.9
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 1.1e-17 93.2 92 53.3
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 1.5e-17 92.8 93 55.9
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 1.5e-17 92.8 89 60.7
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 1.5e-17 92.8 97 52.6
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 2.5e-17 92.0 89 55.1
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 2.5e-17 92.0 95 48.4
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 4.3e-17 91.3 92 50.0
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 9.6e-17 90.1 74 60.8
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 1.6e-16 89.4 94 50.0
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 3.6e-16 88.2 101 50.5
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 3.6e-16 88.2 92 50.0
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.7e-16 87.8 96 53.1
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 6.2e-16 87.4 109 49.5
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 8.1e-16 87.0 98 51.0
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 1.1e-15 86.7 93 50.5
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 1.8e-15 85.9 95 52.6
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.8e-15 85.9 69 59.4
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 1.8e-15 85.9 69 59.4
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 1.8e-15 85.9 88 52.3
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 4.0e-15 84.7 96 50.0
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.0e-15 84.7 96 50.0
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 8.9e-15 83.6 96 46.9
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 1.2e-14 83.2 100 46.0
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 1.2e-14 83.2 97 49.5
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 1.5e-14 82.8 102 48.0
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 2.6e-14 82.0 105 45.7
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 5.8e-14 80.9 90 50.0
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 9.9e-14 80.1 114 42.1
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 1.7e-13 79.3 96 44.8
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 6.4e-13 77.4 103 41.7
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 6.4e-13 77.4 106 42.5
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 8.4e-13 77.0 92 46.7
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 1.1e-12 76.6 99 45.5
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 1.1e-12 76.6 89 47.2
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 1.4e-12 76.3 87 49.4
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 2.4e-12 75.5 90 46.7
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 4.2e-12 74.7 100 49.0
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 5.4e-12 74.3 58 60.3
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 9.3e-12 73.6 97 43.3
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 9.3e-12 73.6 58 58.6
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 2.7e-11 72.0 93 47.3
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 7.8e-11 70.5 87 47.1
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 5.1e-10 67.8 77 49.4
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 8.7e-10 67.0 95 47.4
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 1.1e-09 66.6 95 43.2
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 1.1e-09 66.6 95 43.2
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 3.3e-09 65.1 47 63.8
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 3.3e-09 65.1 54 61.1
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 9.6e-09 63.5 90 42.2
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 9.6e-09 63.5 44 65.9
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 9.6e-09 63.5 72 47.2
AL7G18090 Arabidopsis lyrata HOM05D010996 ORTHO05D009840 1.3e-08 63.2 93 43.0
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 1.6e-08 62.8 100 43.0
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 2.1e-08 62.4 45 64.4
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 2.8e-08 62.0 95 41.1
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 3.6e-08 61.6 94 41.5
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 4.8e-08 61.2 50 52.0
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 8.1e-08 60.5 95 38.9
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 8.1e-08 60.5 95 38.9
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 1.1e-07 60.1 81 44.4
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 1.1e-07 60.1 81 44.4
Sp7g31170 Schrenkiella parvula HOM05D010996 ORTHO05D009840 1.1e-07 60.1 101 45.5
Carub.0007s0701 Capsella rubella HOM05D010996 ORTHO05D009840 1.8e-07 59.3 92 43.5
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 2.4e-07 58.9 47 53.2
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 2.4e-07 58.9 93 47.3
Medtr3g089105 Medicago truncatula HOM05D009255 ORTHO05D011239 2.4e-07 58.9 67 41.8
Psat5g082600 Pisum sativum HOM05D009255 ORTHO05D011239 2.4e-07 58.9 65 46.2
Aa31sc146G10 Aethionema arabicum HOM05D010996 ORTHO05D009840 4.0e-07 58.2 47 57.4
BcaNung02175 Brassica carinata HOM05D010996 ORTHO05D009840 4.0e-07 58.2 62 50.0
Cpa.g.sc42.146 Carica papaya HOM05D008093 ORTHO05D009840 6.9e-07 57.4 52 55.8
TPR.G6325 Trifolium pratense HOM05D009255 ORTHO05D011239 6.9e-07 57.4 60 45.0
BcaNung05339 Brassica carinata HOM05D000119 ORTHO05D000054 2.0e-06 55.8 50 58.0
BolC7t46412H Brassica oleracea HOM05D010996 ORTHO05D009840 2.0e-06 55.8 56 53.6
Thecc.08G142600 Theobroma cacao HOM05D029484 ORTHO05D011239 2.0e-06 55.8 75 38.7
Gohir.A02G067700 Gossypium hirsutum HOM05D029484 ORTHO05D011239 5.8e-06 54.3 58 44.8
Gorai.005G083100 Gossypium raimondii HOM05D029484 ORTHO05D011239 5.8e-06 54.3 58 44.8
VMungo1309G1730 Vigna mungo HOM05D009255 ORTHO05D011239 5.8e-06 54.3 64 40.6
Phvul.009G134100 Phaseolus vulgaris HOM05D009255 ORTHO05D011239 9.9e-06 53.5 64 40.6


User provided reference genes

Program Settings