Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.9e-40 167.5 78 100.0
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.1e-33 145.2 75 89.3
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.6e-20 102.4 62 79.0
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.5e-20 101.3 62 77.4
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 7.2e-18 93.6 58 74.1
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 8.0e-17 90.1 62 67.7
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 4.0e-16 87.8 63 69.8
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 8.9e-16 86.7 63 65.1
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 9.8e-15 83.2 62 62.9
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 1.3e-14 82.8 63 66.7
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 8.3e-14 80.1 61 63.9
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 7.0e-13 77.0 62 59.7
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 7.0e-13 77.0 63 58.7
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.0e-11 73.2 78 51.3
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.0e-11 73.2 78 51.3
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 2.3e-11 72.0 78 51.3
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.3e-11 72.0 77 50.6
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 3.9e-11 71.2 76 51.3
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 5.0e-11 70.9 57 57.9
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 5.0e-11 70.9 66 59.1
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 6.6e-11 70.5 64 59.4
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 6.6e-11 70.5 83 47.0
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.6e-11 70.5 78 50.0
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.1e-10 69.7 63 55.6
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.5e-10 69.3 77 46.8
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.5e-10 69.3 78 48.7
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.9e-10 68.9 62 54.8
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 4.3e-10 67.8 62 51.6
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 5.6e-10 67.4 73 54.8
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 7.3e-10 67.0 75 52.0
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 9.5e-10 66.6 57 54.4
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 9.5e-10 66.6 67 53.7
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 9.5e-10 66.6 77 46.8
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.6e-09 65.9 65 50.8
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 2.1e-09 65.5 65 52.3
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.8e-09 65.1 61 50.8
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.8e-09 65.1 60 55.0
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 2.8e-09 65.1 62 56.5
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.6e-09 64.7 61 50.8
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.6e-09 64.7 80 46.2
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 4.7e-09 64.3 64 57.8
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 4.7e-09 64.3 71 50.7
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 6.2e-09 63.9 65 53.8
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 8.0e-09 63.5 40 67.5
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 8.0e-09 63.5 40 67.5
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 8.0e-09 63.5 41 68.3
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 8.0e-09 63.5 75 49.3
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.0e-08 63.2 56 57.1
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.4e-08 62.8 80 45.0
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.8e-08 62.4 58 55.2
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.3e-08 62.0 65 52.3
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.3e-08 62.0 75 49.3
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 2.3e-08 62.0 64 53.1
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 4.0e-08 61.2 43 62.8
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 4.0e-08 61.2 80 47.5
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 5.2e-08 60.8 54 59.3
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 5.2e-08 60.8 57 52.6
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 5.2e-08 60.8 74 47.3
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.8e-08 60.5 61 52.5
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 8.9e-08 60.1 59 52.5
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.5e-07 59.3 44 61.4
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.0e-07 58.9 74 44.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 2.0e-07 58.9 38 68.4
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 2.0e-07 58.9 70 45.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.6e-07 58.5 61 50.8
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 2.6e-07 58.5 51 54.9
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 2.6e-07 58.5 55 58.2
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 3.4e-07 58.2 47 61.7
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 3.4e-07 58.2 57 54.4
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 3.4e-07 58.2 72 44.4
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 3.4e-07 58.2 64 45.3
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 4.4e-07 57.8 74 44.6
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 5.8e-07 57.4 58 50.0
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 5.8e-07 57.4 69 42.0
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 7.5e-07 57.0 43 62.8
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 9.8e-07 56.6 39 66.7
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.3e-06 56.2 64 46.9
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.7e-06 55.8 41 63.4
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.9e-06 55.1 49 53.1
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 3.7e-06 54.7 43 58.1
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 3.7e-06 54.7 65 47.7
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.9e-06 54.3 74 43.2
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 6.4e-06 53.9 59 47.5
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 6.4e-06 53.9 57 47.4


User provided reference genes

Program Settings