Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.9e-32 141.7 63 100.0
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.8e-28 127.9 58 96.6
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.3e-22 109.0 49 91.8
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 2.3e-22 108.2 50 86.0
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 2.3e-22 108.2 50 86.0
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 3.9e-22 107.5 53 81.1
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 3.9e-22 107.5 49 89.8
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.9e-22 107.5 49 89.8
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.1e-21 105.9 49 85.7
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.1e-21 105.9 49 85.7
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 1.9e-21 105.1 49 83.7
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 1.9e-21 105.1 56 73.2
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 4.8e-20 100.5 50 78.0
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 8.2e-20 99.8 52 76.9
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-19 99.4 54 74.1
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 3.1e-19 97.8 48 79.2
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 3.1e-19 97.8 48 79.2
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 3.1e-19 97.8 48 79.2
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 3.1e-19 97.8 48 79.2
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 3.1e-19 97.8 50 76.0
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 4.1e-19 97.4 51 72.5
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 5.3e-19 97.1 49 75.5
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 6.9e-19 96.7 55 70.9
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.9e-19 96.7 55 70.9
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.9e-19 96.7 55 70.9
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 6.9e-19 96.7 50 72.0
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 6.9e-19 96.7 55 69.1
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 9.0e-19 96.3 49 75.5
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 9.0e-19 96.3 50 72.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 9.0e-19 96.3 49 75.5
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 9.0e-19 96.3 49 75.5
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 9.0e-19 96.3 48 77.1
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 9.0e-19 96.3 49 73.5
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 1.2e-18 95.9 48 75.0
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 1.2e-18 95.9 49 73.5
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.2e-18 95.9 49 77.6
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 1.2e-18 95.9 49 73.5
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 1.2e-18 95.9 49 73.5
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.5e-18 95.5 54 68.5
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 75.5
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 71.4
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.0e-18 95.1 49 73.5
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 2.6e-18 94.7 49 73.5
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 2.6e-18 94.7 49 71.4
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 2.6e-18 94.7 49 73.5
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.6e-18 94.7 49 73.5
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 2.6e-18 94.7 55 70.9
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 3.4e-18 94.4 49 73.5
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 3.4e-18 94.4 49 73.5
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 3.4e-18 94.4 49 71.4
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.4e-18 94.4 47 76.6
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 3.4e-18 94.4 49 71.4
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 3.4e-18 94.4 49 71.4
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 3.4e-18 94.4 50 72.0
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 4.5e-18 94.0 49 71.4
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 4.5e-18 94.0 49 73.5
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 4.5e-18 94.0 48 72.9
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 4.5e-18 94.0 49 71.4
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 4.5e-18 94.0 49 73.5
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 5.9e-18 93.6 49 71.4
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 5.9e-18 93.6 48 75.0
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 5.9e-18 93.6 48 72.9
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 7.6e-18 93.2 49 73.5
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 7.6e-18 93.2 54 70.4
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.0e-17 92.8 48 72.9
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.3e-17 92.4 49 71.4
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.3e-17 92.4 49 71.4
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.3e-17 92.4 49 71.4
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 1.3e-17 92.4 49 71.4
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.3e-17 92.4 49 71.4
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.3e-17 92.4 49 71.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 1.7e-17 92.0 49 71.4
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 1.7e-17 92.0 48 75.0
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.7e-17 92.0 49 69.4
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.7e-17 92.0 49 73.5
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 1.7e-17 92.0 49 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 2.2e-17 91.7 49 71.4
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 2.2e-17 91.7 48 70.8
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 2.2e-17 91.7 48 70.8
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 2.2e-17 91.7 49 69.4
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.2e-17 91.7 50 72.0
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.2e-17 91.7 45 73.3
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 2.2e-17 91.7 49 69.4
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.2e-17 91.7 49 71.4
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 2.9e-17 91.3 49 69.4
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 3.8e-17 90.9 49 71.4
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 3.8e-17 90.9 49 71.4
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 3.8e-17 90.9 49 69.4
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.8e-17 90.9 49 69.4
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 3.8e-17 90.9 49 71.4
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 5.0e-17 90.5 48 72.9
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 5.0e-17 90.5 48 72.9
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 5.0e-17 90.5 49 71.4
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 5.0e-17 90.5 49 69.4
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 5.0e-17 90.5 49 73.5
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 5.0e-17 90.5 49 71.4
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 6.5e-17 90.1 48 72.9
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 6.5e-17 90.1 48 68.8
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 6.5e-17 90.1 57 61.4
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 6.5e-17 90.1 48 72.9
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 6.5e-17 90.1 48 68.8
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 6.5e-17 90.1 50 66.0
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 8.5e-17 89.7 49 67.3
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.5e-17 89.7 49 67.3
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.5e-17 89.7 49 67.3
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 8.5e-17 89.7 50 70.0
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 8.5e-17 89.7 49 69.4
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.1e-16 89.4 49 71.4
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.1e-16 89.4 49 69.4
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.1e-16 89.4 50 68.0
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.1e-16 89.4 50 66.0
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 1.1e-16 89.4 49 67.3
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 1.1e-16 89.4 78 52.6
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.1e-16 89.4 49 69.4
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 1.1e-16 89.4 49 69.4
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.4e-16 89.0 48 70.8
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.4e-16 89.0 48 70.8
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.9e-16 88.6 51 62.7
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.5e-16 88.2 50 64.0
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.5e-16 88.2 56 66.1
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 3.2e-16 87.8 50 68.0
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.2e-16 87.8 48 66.7
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 3.2e-16 87.8 49 63.3
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 4.2e-16 87.4 49 69.4
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 5.5e-16 87.0 49 67.3
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 7.2e-16 86.7 49 63.3
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 9.3e-16 86.3 47 68.1
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.2e-15 85.9 49 67.3
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.2e-15 85.9 49 63.3
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 2.1e-15 85.1 49 67.3
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 2.7e-15 84.7 49 67.3
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 2.7e-15 84.7 49 63.3
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.7e-15 84.7 49 63.3
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 3.6e-15 84.3 49 67.3
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 3.6e-15 84.3 49 67.3
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 4.6e-15 84.0 49 69.4
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 4.6e-15 84.0 49 69.4
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.1e-15 83.6 49 63.3
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 6.1e-15 83.6 46 73.9
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 7.9e-15 83.2 49 65.3
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-14 82.8 49 65.3
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 1.3e-14 82.4 49 63.3
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 1.3e-14 82.4 49 65.3
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 1.3e-14 82.4 49 65.3
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 1.8e-14 82.0 49 67.3
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 2.3e-14 81.6 49 65.3
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 3.0e-14 81.3 73 49.3
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 3.0e-14 81.3 49 61.2
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 3.9e-14 80.9 49 63.3
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 1.1e-13 79.3 49 59.2
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.9e-13 78.6 41 80.5
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 2.5e-13 78.2 49 59.2
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 2.5e-13 78.2 52 59.6
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 5.7e-13 77.0 49 63.3
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.3e-12 75.9 49 57.1
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 1.3e-12 75.9 49 57.1
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 2.8e-12 74.7 39 76.9
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 4.1e-11 70.9 49 53.1
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 5.3e-11 70.5 32 78.1
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 6.9e-11 70.1 49 53.1
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 1.2e-10 69.3 49 51.0
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 2.6e-10 68.2 42 57.1
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.7e-09 65.5 49 49.0
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.2e-09 65.1 49 46.9
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.2e-09 65.1 49 46.9
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.2e-07 59.3 35 62.9
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.2e-07 59.3 35 62.9


User provided reference genes

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