Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.5e-74 282.0 137 100.0
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 9.0e-64 246.9 137 90.5
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.3e-51 205.7 136 75.7
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 5.9e-47 191.0 136 71.3
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.4e-45 186.4 129 74.4
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 3.2e-45 185.3 129 73.6
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 8.2e-41 170.6 136 66.2
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.1e-40 170.2 136 66.2
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 7.7e-39 164.1 133 60.2
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.1e-37 160.2 136 63.2
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.2e-37 158.7 133 60.2
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 4.2e-37 158.3 131 63.4
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.2e-36 156.8 118 66.9
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 3.9e-35 151.8 136 59.6
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.1e-34 150.2 117 66.7
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.5e-34 149.8 133 58.6
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.0e-34 149.4 149 55.0
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 2.6e-34 149.1 136 58.1
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 7.4e-34 147.5 135 60.7
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 7.4e-34 147.5 125 62.4
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 9.7e-34 147.1 137 58.4
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 9.7e-34 147.1 137 58.4
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.3e-33 146.7 123 61.8
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.8e-33 144.8 133 56.4
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 4.8e-33 144.8 124 62.1
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.8e-32 142.9 128 60.2
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 7.0e-32 141.0 124 58.9
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.5e-31 139.8 130 58.5
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.5e-31 139.8 125 59.2
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 2.0e-31 139.4 125 63.2
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.6e-31 139.0 120 60.8
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 3.5e-31 138.7 139 57.6
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 5.9e-31 137.9 122 59.0
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 7.7e-31 137.5 121 57.9
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 7.7e-31 137.5 133 56.4
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 7.7e-31 137.5 137 53.3
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 7.7e-31 137.5 137 54.7
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 7.7e-31 137.5 128 56.2
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 7.7e-31 137.5 125 56.8
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.3e-30 136.7 122 59.8
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.3e-30 136.7 135 53.3
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.3e-30 136.7 135 53.3
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.7e-30 136.3 135 57.0
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.2e-30 136.0 110 60.0
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.9e-30 135.6 125 60.8
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 3.8e-30 135.2 133 54.1
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 5.0e-30 134.8 137 52.6
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 5.0e-30 134.8 138 53.6
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 6.5e-30 134.4 125 56.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 1.1e-29 133.7 126 55.6
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 2.5e-29 132.5 122 56.6
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 4.2e-29 131.7 114 61.4
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 4.2e-29 131.7 121 57.9
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 7.2e-29 131.0 135 55.6
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 9.4e-29 130.6 123 58.5
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 9.4e-29 130.6 133 51.1
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 9.4e-29 130.6 113 62.8
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 9.4e-29 130.6 113 63.7
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 9.4e-29 130.6 133 56.4
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.2e-28 130.2 123 58.5
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 1.2e-28 130.2 133 51.1
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.6e-28 129.8 115 62.6
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.6e-28 129.8 133 51.1
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 2.1e-28 129.4 133 51.1
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.1e-28 129.4 121 56.2
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 2.7e-28 129.0 136 47.8
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.7e-28 129.0 134 54.5
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 3.6e-28 128.6 133 50.4
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 3.6e-28 128.6 184 42.9
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.7e-28 128.3 133 53.4
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.0e-27 127.1 131 54.2
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.8e-27 126.3 123 56.1
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.8e-27 126.3 131 49.6
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 3.0e-27 125.6 135 51.1
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 3.0e-27 125.6 133 50.4
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 3.9e-27 125.2 135 48.1
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 5.2e-27 124.8 130 53.1
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 6.7e-27 124.4 139 50.4
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.5e-26 123.2 102 61.8
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 2.6e-26 122.5 111 57.7
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.3e-26 122.1 124 57.3
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 4.4e-26 121.7 115 58.3
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 4.4e-26 121.7 122 51.6
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.4e-26 121.7 122 51.6
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 5.7e-26 121.3 125 52.8
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 7.4e-26 120.9 134 53.7
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 7.4e-26 120.9 134 47.8
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 9.7e-26 120.6 123 56.9
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.3e-25 120.2 115 56.5
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 8.2e-25 117.5 130 49.2
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 8.2e-25 117.5 135 46.7
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.4e-24 115.9 122 50.0
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.4e-24 115.9 130 48.5
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.1e-24 115.2 126 50.8
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 5.3e-24 114.8 117 52.1
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.3e-24 114.8 60 81.7
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 7.0e-24 114.4 130 49.2
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 7.0e-24 114.4 130 48.5
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.2e-23 113.6 132 50.0
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.6e-23 113.2 133 47.4
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 3.5e-23 112.1 128 47.7
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 5.9e-23 111.3 113 56.6
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.3e-22 110.2 136 50.0
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 1.7e-22 109.8 126 48.4
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 3.8e-22 108.6 123 48.8
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 5.0e-22 108.2 109 53.2
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 6.5e-22 107.8 147 46.3
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 6.5e-22 107.8 123 48.0
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 6.5e-22 107.8 130 47.7
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 8.5e-22 107.5 73 69.9
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 3.2e-21 105.5 122 47.5
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 4.2e-21 105.1 111 50.5
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 4.2e-21 105.1 111 50.5
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 7.2e-21 104.4 115 53.0
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.2e-20 103.6 73 67.1
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 2.7e-20 102.4 108 56.5
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.6e-20 102.1 60 76.7
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 4.7e-20 101.7 64 70.3
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.0e-19 100.5 107 55.1
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.0e-19 100.5 107 55.1
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.4e-19 100.1 145 42.8
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 5.2e-19 98.2 94 60.6
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 5.2e-19 98.2 64 71.9
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 6.8e-19 97.8 77 67.5
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 6.8e-19 97.8 115 46.1
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 6.8e-19 97.8 63 68.3
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.2e-18 97.1 109 51.4
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.5e-18 96.7 108 53.7
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.0e-18 96.3 111 49.5
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 3.4e-18 95.5 69 62.3
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 7.5e-18 94.4 133 45.1
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 9.7e-18 94.0 105 49.5
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.3e-17 93.6 121 44.6
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.2e-17 92.8 73 67.1
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 7.7e-15 84.3 68 54.4
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 2.2e-14 82.8 52 67.3
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 6.5e-14 81.3 51 66.7
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 6.5e-14 81.3 50 66.0
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 2.5e-13 79.3 61 60.7
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.6e-12 75.5 49 61.2
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 8.0e-12 74.3 55 70.9
CAN.G536.1 Capsicum annuum HOM05D006894 ORTHO05D000067 2.3e-11 72.8 56 67.9
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.5e-10 70.1 40 77.5
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 2.0e-10 69.7 85 48.2
SalBow1G4992 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.8e-09 65.9 85 47.1
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.7e-09 65.5 86 47.7
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 3.7e-09 65.5 84 48.8
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 4.8e-09 65.1 77 46.8
SalBow1G0501 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.3e-09 64.7 85 47.1
SalBow1G0857 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.3e-09 64.3 85 45.9
SalBow1G3820 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.1e-08 62.4 85 44.7
SalBow1G6351 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.1e-08 62.4 81 43.2
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 5.4e-08 61.6 99 47.5
SalBow1G6948 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.0e-06 57.4 85 42.4
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.0e-06 57.4 37 70.3
Nitab4.5_0001726g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.8e-06 55.5 26 92.3
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 6.6e-06 54.7 95 35.8
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 6.6e-06 54.7 35 68.6


User provided reference genes

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