Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.9e-76 288.1 152 100.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.1e-70 270.0 144 97.2
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 7.1e-70 267.3 142 98.6
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.7e-69 265.4 141 97.9
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.7e-69 265.4 141 97.9
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.3e-63 246.5 147 85.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.7e-63 246.1 149 85.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 6.5e-63 244.2 149 83.9
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.1e-62 243.4 146 84.9
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.9e-62 242.7 142 88.0
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.2e-62 241.9 151 83.4
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 5.5e-62 241.1 143 86.0
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 9.3e-62 240.4 141 87.2
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.7e-61 238.8 141 87.2
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.7e-61 238.8 142 84.5
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.7e-61 238.8 133 94.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 6.1e-61 237.7 140 86.4
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 7.9e-61 237.3 152 79.6
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.0e-60 236.9 148 81.8
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.0e-60 236.9 142 83.8
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.8e-60 236.1 150 80.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.0e-60 235.3 150 83.3
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 3.9e-60 235.0 140 84.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 3.9e-60 235.0 150 80.7
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 5.1e-60 234.6 147 82.3
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 5.1e-60 234.6 153 79.1
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.1e-60 234.6 150 82.7
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 6.7e-60 234.2 147 81.6
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.1e-59 233.4 147 81.0
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.9e-59 232.6 145 81.4
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 3.3e-59 231.9 147 81.6
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.3e-59 231.5 152 80.3
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.7e-59 231.1 142 79.6
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 7.4e-59 230.7 142 80.3
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 9.7e-59 230.3 133 89.5
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-58 229.9 150 78.7
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.3e-58 229.9 150 79.3
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.6e-58 229.6 148 79.1
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.6e-58 229.6 150 78.7
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 2.2e-58 229.2 138 85.5
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 2.2e-58 229.2 142 80.3
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 4.8e-58 228.0 142 80.3
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 4.8e-58 228.0 142 80.3
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 6.3e-58 227.6 146 78.8
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 6.3e-58 227.6 146 78.8
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 6.3e-58 227.6 138 85.5
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.1e-57 226.9 145 77.9
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.1e-57 226.9 181 69.1
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.4e-57 226.5 146 80.1
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.4e-57 226.5 142 79.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.8e-57 226.1 146 78.1
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.8e-57 226.1 146 79.5
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.8e-57 226.1 146 79.5
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.8e-57 226.1 147 78.2
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.8e-57 226.1 146 78.8
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-57 226.1 143 80.4
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.4e-57 225.7 139 84.2
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.4e-57 225.7 146 78.8
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.4e-57 225.7 139 82.7
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 3.1e-57 225.3 145 79.3
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 5.3e-57 224.6 145 79.3
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 5.3e-57 224.6 137 83.2
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 5.3e-57 224.6 139 81.3
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 6.9e-57 224.2 139 82.0
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 6.9e-57 224.2 139 82.0
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 6.9e-57 224.2 139 82.0
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 6.9e-57 224.2 146 77.4
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 9.0e-57 223.8 146 78.1
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 9.0e-57 223.8 142 87.3
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-56 223.4 142 78.9
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.5e-56 223.0 143 78.3
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.0e-56 222.6 140 80.0
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 2.6e-56 222.2 137 81.0
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 2.6e-56 222.2 137 81.0
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 80.7
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.5e-56 221.5 148 78.4
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.9e-56 221.1 143 76.9
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-55 219.5 143 75.5
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.7e-55 219.5 138 81.2
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.7e-55 219.5 139 79.1
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.2e-55 219.2 138 79.0
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-55 219.2 143 77.6
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-55 218.8 143 75.5
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-55 218.8 143 75.5
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 2.9e-55 218.8 138 79.7
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.8e-55 218.4 146 76.0
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 5.0e-55 218.0 146 76.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 8.5e-55 217.2 145 77.2
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-54 216.9 143 75.5
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 4.2e-54 214.9 146 75.3
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 5.5e-54 214.5 147 74.1
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 7.2e-54 214.2 144 75.7
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 7.2e-54 214.2 218 59.2
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 9.4e-54 213.8 147 74.8
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 9.4e-54 213.8 135 79.3
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 9.4e-54 213.8 146 74.0
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.6e-53 213.0 146 75.3
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.6e-53 213.0 219 57.5
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 3.6e-53 211.8 189 63.5
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 4.6e-53 211.5 197 58.9
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.0e-52 210.3 145 74.5
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.8e-52 209.5 147 72.1
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.3e-52 209.1 131 84.7
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 2.3e-52 209.1 131 84.7
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 3.0e-52 208.8 139 74.8
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 8.8e-52 207.2 185 63.8
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.0e-51 206.1 116 89.7
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 3.3e-51 205.3 128 83.6
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.3e-50 203.4 154 69.5
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.8e-50 202.2 143 75.5
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.7e-50 201.8 143 71.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-50 201.4 143 71.3
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 8.2e-50 200.7 129 80.6
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-48 196.8 143 69.9
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.5e-48 196.4 137 72.3
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 2.0e-48 196.1 128 80.5
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.6e-48 195.7 123 80.5
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.7e-47 193.0 116 82.8
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 2.2e-47 192.6 228 51.8
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-46 190.3 115 83.5
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-46 190.3 115 83.5
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-46 189.5 115 83.5
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.2e-46 188.7 115 82.6
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 7.2e-46 187.6 116 81.9
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-45 185.7 115 81.7
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.7e-45 185.7 148 62.8
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-45 185.3 115 81.7
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 4.7e-45 184.9 115 80.9
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 6.1e-45 184.5 115 80.9
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.0e-44 183.7 137 61.3
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.8e-44 180.6 109 81.7
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.8e-44 180.6 109 81.7
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 8.8e-44 180.6 147 58.5
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.7e-43 177.9 114 78.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 2.8e-42 175.6 149 60.4
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.7e-39 166.4 142 55.6
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 3.8e-39 165.2 160 60.0
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.4e-36 156.8 100 83.0
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.3e-34 150.2 87 89.7
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.8e-34 148.3 103 75.7
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 5.9e-32 141.4 92 84.8
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 9.4e-30 134.0 200 43.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 4.7e-29 131.7 135 56.3
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.4e-28 130.2 82 72.0
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 4.0e-28 128.6 144 45.1
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.7e-26 123.2 146 39.7
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.3e-26 120.9 70 87.1
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-25 119.4 71 87.3
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-25 119.4 71 87.3
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-24 116.7 71 84.5
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 2.7e-24 115.9 73 74.0
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.5e-22 109.4 64 87.5
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-21 105.5 65 84.6
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.8e-19 97.4 65 70.8
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 9.8e-19 97.4 65 70.8
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.2e-16 90.5 68 72.1
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.7e-16 89.4 65 64.6
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 4.5e-16 88.6 49 85.7
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.8e-16 87.8 68 70.6
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.3e-15 87.0 143 30.8
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.3e-15 87.0 62 74.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 5.6e-14 81.6 135 29.6
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.0e-11 73.2 53 64.2
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.6e-11 72.8 58 70.7
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.6e-11 72.8 58 70.7
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.3e-07 59.7 47 70.2


User provided reference genes

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