Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.5e-225 785.8 377 100.0
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.4e-222 774.6 377 98.7
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 6.3e-200 700.7 377 89.4
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.1e-191 673.3 381 87.1
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 4.1e-191 671.4 378 86.2
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.8e-167 592.8 373 76.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 5.4e-167 591.3 357 78.7
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.2e-166 590.1 380 78.7
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 6.8e-162 574.3 378 74.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 2.4e-159 565.8 393 69.7
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 4.1e-159 565.1 360 75.8
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 9.2e-159 563.9 393 71.2
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 3.5e-158 562.0 357 73.9
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.3e-157 560.1 379 71.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.3e-157 559.3 383 71.5
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 8.6e-157 557.4 383 71.3
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 2.5e-156 555.8 379 69.9
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.6e-155 553.1 338 77.5
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.6e-155 553.1 390 69.2
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 8.0e-155 550.8 363 70.0
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.4e-154 550.1 378 71.7
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.4e-154 550.1 376 71.8
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 1.8e-154 549.7 388 67.8
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 2.3e-154 549.3 375 70.1
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 3.0e-154 548.9 379 69.9
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.0e-154 548.9 393 69.2
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 5.2e-154 548.1 383 69.2
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 5.2e-154 548.1 353 74.8
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.2e-153 547.0 393 69.0
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 4.4e-153 545.0 379 69.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.4e-153 545.0 393 69.0
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 9.8e-153 543.9 384 68.5
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 2.2e-152 542.7 362 69.9
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.9e-152 542.3 362 69.6
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 3.7e-152 542.0 365 69.0
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 3.7e-152 542.0 358 71.8
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 8.3e-152 540.8 378 69.3
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 8.3e-152 540.8 364 71.7
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.1e-151 540.4 382 68.3
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.4e-151 540.0 387 68.5
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.4e-151 540.0 358 73.5
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.8e-151 539.7 393 67.9
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.2e-151 538.9 372 70.2
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 3.2e-151 538.9 358 73.5
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 4.1e-151 538.5 383 66.1
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.4e-151 538.1 387 68.5
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 9.2e-151 537.3 369 69.4
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.6e-150 536.6 380 67.9
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 2.0e-150 536.2 386 65.5
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.0e-150 536.2 386 66.1
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 2.0e-150 536.2 358 71.8
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.7e-150 535.8 361 71.7
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 4.6e-150 535.0 379 67.5
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-149 533.5 386 65.3
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.3e-149 533.5 386 65.3
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.3e-149 533.5 386 65.3
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.3e-149 533.5 385 66.5
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.3e-149 533.5 390 68.7
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.3e-149 533.5 363 70.5
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 6.6e-149 531.2 387 65.6
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.6e-149 530.8 337 73.6
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.1e-148 530.4 398 65.3
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.1e-148 530.4 389 67.4
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 3.3e-148 528.9 378 66.7
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 3.3e-148 528.9 387 65.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 5.6e-148 528.1 383 65.3
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 5.6e-148 528.1 383 65.3
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 9.5e-148 527.3 385 67.5
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.2e-147 526.9 348 73.0
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.1e-147 526.2 337 73.0
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.8e-147 525.8 352 71.6
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.7e-147 525.0 348 72.7
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.0e-146 523.9 383 68.1
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.4e-146 523.5 387 64.9
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.4e-146 523.5 337 74.5
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.1e-146 522.3 373 66.5
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.1e-146 522.3 373 66.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.8e-146 521.2 358 70.9
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.8e-146 521.2 358 70.9
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.2e-145 520.4 359 68.2
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 9.8e-145 517.3 386 66.8
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.3e-144 516.9 389 65.0
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 8.3e-144 514.2 347 69.7
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.1e-143 513.8 372 66.9
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.4e-143 513.5 374 66.0
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 3.2e-143 512.3 356 66.6
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.2e-143 510.8 344 68.9
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.6e-142 510.0 355 69.9
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.7e-142 509.2 335 71.0
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 6.0e-142 508.1 392 65.8
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 7.8e-142 507.7 397 64.5
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.0e-141 507.3 383 64.5
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.0e-141 507.3 347 69.7
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.0e-141 505.0 333 71.5
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 6.6e-141 504.6 355 69.3
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.5e-140 503.4 319 72.4
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.9e-140 503.1 308 76.6
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 4.3e-140 501.9 393 63.4
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.1e-139 499.6 358 65.4
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.8e-139 499.2 305 77.0
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.1e-138 497.3 363 66.9
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.4e-138 496.9 334 71.0
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.3e-138 496.1 337 69.7
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.0e-138 495.4 368 65.8
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 3.7e-136 488.8 361 66.5
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.4e-135 486.9 337 70.3
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 5.4e-135 485.0 338 69.8
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.5e-134 482.3 367 65.1
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.5e-134 482.3 337 68.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 2.5e-132 476.1 389 62.5
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 4.3e-132 475.3 341 68.0
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.1e-130 469.2 337 66.2
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.2e-127 457.6 382 62.3
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 6.0e-126 454.9 343 64.7
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 5.2e-122 441.8 392 58.4
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 8.9e-122 441.0 383 58.7
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.7e-120 436.8 375 59.7
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 4.9e-120 435.3 386 58.0
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 4.6e-118 428.7 356 59.0
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.9e-117 425.6 319 63.3
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 3.9e-117 425.6 360 58.9
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 9.6e-116 421.0 347 60.8
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.6e-115 420.2 298 66.1
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.9e-112 409.5 364 57.7
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.2e-111 405.6 281 67.3
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.6e-110 403.7 322 59.6
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.6e-108 394.4 246 74.0
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.1e-103 380.9 376 53.7
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.5e-103 378.6 300 63.0
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.6e-102 377.1 205 87.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.1e-100 370.9 381 53.3
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-96 357.1 197 82.2
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.7e-96 357.1 310 58.1
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 8.4e-96 354.8 197 82.7
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 3.1e-90 336.3 231 73.2
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.1e-84 317.8 218 68.8
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.7e-83 312.8 176 81.2
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.2e-79 299.7 271 56.5
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 7.4e-76 288.5 232 61.6
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 4.8e-75 285.8 397 41.3
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.8e-74 283.9 193 73.1
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.1e-70 270.4 340 44.1
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.8e-69 265.0 229 57.6
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.1e-68 264.6 302 44.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.9e-63 247.3 221 55.7
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.0e-62 241.9 253 51.8
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.4e-58 231.1 352 38.4
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.0e-48 198.4 378 34.9
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 5.7e-44 182.6 125 69.6
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.9e-32 143.3 148 50.7
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 7.5e-28 129.0 109 56.9
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.0e-26 122.5 113 52.2
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.1e-21 107.1 63 74.6
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 4.4e-20 103.2 57 78.9
unitig_8.g3591 Utricularia gibba HOM05D004580 ORTHO05D005917 2.9e-11 73.9 65 56.9
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 2.1e-06 57.8 29 82.8


User provided reference genes

Program Settings