Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 4.6e-189 664.5 352 100.0
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 9.1e-185 650.2 352 97.4
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 4.7e-181 637.9 352 95.2
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 2.0e-179 632.5 352 94.6
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 5.7e-179 630.9 352 94.6
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 2.0e-171 605.9 353 92.4
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 3.1e-169 598.6 353 91.8
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.1e-142 510.4 357 75.6
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 4.3e-142 508.4 356 75.6
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.0e-140 503.8 358 75.7
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 8.9e-140 500.7 362 74.6
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 2.9e-138 495.7 357 74.5
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 4.1e-137 491.9 356 74.4
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 4.1e-137 491.9 358 72.1
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.6e-136 488.4 341 75.1
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 1.3e-135 486.9 361 74.0
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.9e-134 483.0 358 73.2
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.5e-134 482.6 358 72.6
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 9.5e-134 480.7 351 73.5
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 5.2e-132 474.9 364 72.5
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 5.2e-132 474.9 357 74.5
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 6.8e-132 474.6 359 74.7
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 3.4e-131 472.2 356 69.9
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 1.3e-130 470.3 322 78.9
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.3e-130 470.3 360 73.9
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.9e-130 469.2 308 80.2
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 3.7e-130 468.8 351 74.1
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 4.9e-130 468.4 363 71.3
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 4.9e-130 468.4 356 70.2
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 8.3e-130 467.6 359 73.3
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 8.3e-130 467.6 315 77.1
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 8.3e-130 467.6 358 72.3
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.4e-129 466.8 359 73.3
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.9e-129 466.5 359 73.8
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 2.4e-129 466.1 361 72.0
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 4.1e-129 465.3 366 71.0
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 9.2e-129 464.2 364 70.9
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.6e-128 463.4 359 73.0
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.6e-128 463.4 357 71.4
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.1e-128 463.0 357 71.1
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 2.1e-128 463.0 359 73.0
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 4.6e-128 461.8 359 72.7
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 6.0e-128 461.5 357 69.7
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 6.0e-128 461.5 385 65.2
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 7.8e-128 461.1 358 72.1
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.0e-127 460.7 303 77.2
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.9e-127 458.8 357 72.3
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 6.6e-127 458.0 328 74.4
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.5e-126 456.8 331 74.3
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.5e-126 456.8 359 71.9
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 2.5e-126 456.1 318 75.5
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 2.5e-126 456.1 318 75.5
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.5e-126 456.1 358 68.7
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 5.6e-126 454.9 380 67.1
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.2e-125 453.8 352 70.2
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.2e-125 453.8 354 71.8
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.6e-125 453.4 314 76.8
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 2.1e-125 453.0 310 77.4
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 2.8e-125 452.6 317 75.4
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 2.8e-125 452.6 331 73.7
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 2.8e-125 452.6 328 75.9
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 2.8e-125 452.6 361 71.2
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 3.6e-125 452.2 326 73.6
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 4.7e-125 451.8 357 70.3
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 8.1e-125 451.1 317 75.1
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.8e-124 449.9 362 69.9
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.1e-124 449.1 296 78.7
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 3.1e-124 449.1 310 76.8
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 3.1e-124 449.1 367 69.5
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 4.0e-124 448.7 356 71.1
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.9e-124 447.6 354 71.8
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.2e-123 447.2 327 70.3
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.0e-123 446.4 360 69.2
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 2.0e-123 446.4 371 69.8
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.6e-123 446.0 360 69.4
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.6e-123 446.0 359 71.6
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.4e-123 445.3 354 70.9
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.8e-123 444.9 357 70.9
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 7.6e-123 444.5 365 68.2
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.3e-122 443.7 357 70.3
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.3e-122 443.7 357 70.3
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.3e-122 443.7 357 70.3
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.7e-122 443.4 329 72.0
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 6.4e-122 441.4 370 67.8
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 8.4e-122 441.0 265 84.9
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 8.4e-122 441.0 265 84.9
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 5.4e-121 438.3 311 75.9
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 7.1e-121 438.0 367 67.8
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 9.2e-121 437.6 361 68.7
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 9.2e-121 437.6 394 64.7
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 7.8e-120 434.5 259 86.5
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.0e-119 434.1 283 80.9
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.7e-119 433.3 356 68.3
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.7e-119 433.3 270 82.2
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.7e-119 433.3 357 67.2
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.7e-119 433.3 356 67.7
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 3.0e-119 432.6 283 80.6
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 3.0e-119 432.6 358 68.4
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 3.0e-119 432.6 368 67.9
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 5.1e-119 431.8 282 81.2
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 6.6e-119 431.4 353 68.8
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.5e-118 429.5 330 72.4
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 2.5e-118 429.5 285 79.3
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 4.3e-118 428.7 282 80.5
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 5.6e-118 428.3 352 69.3
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 5.6e-118 428.3 359 68.0
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 5.6e-118 428.3 298 76.2
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-117 427.2 279 79.9
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-117 427.2 282 79.1
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.2e-117 427.2 282 79.4
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 1.6e-117 426.8 282 79.8
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.6e-117 426.8 282 79.8
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 2.1e-117 426.4 283 80.9
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 6.2e-117 424.9 355 68.5
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 8.1e-117 424.5 298 75.2
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 4.0e-116 422.2 312 73.1
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 4.0e-116 422.2 312 73.4
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 8.9e-116 421.0 312 73.4
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 2.1e-112 409.8 265 82.3
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.1e-112 409.8 275 77.5
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 2.7e-112 409.5 358 66.2
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.3e-111 407.1 450 55.6
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.1e-110 404.1 345 66.4
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.6e-109 399.1 304 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 8.1e-109 397.9 273 76.9
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 1.4e-108 397.1 358 63.7
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 7.6e-107 391.3 309 67.3
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 2.4e-105 386.3 225 88.0
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.6e-104 383.6 358 64.0
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.6e-104 383.6 254 77.6
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 2.7e-104 382.9 251 77.7
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.3e-103 379.8 243 79.0
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 2.3e-103 379.8 348 61.8
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.1e-103 378.6 335 64.2
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.8e-101 372.9 301 65.8
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 4.9e-98 362.1 299 66.9
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 9.6e-94 347.8 251 68.1
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 3.7e-93 345.9 310 64.2
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.3e-90 337.4 242 72.7
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 3.9e-87 325.9 335 57.6
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.3e-82 310.8 319 57.7
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 3.1e-76 289.7 249 64.3
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 4.7e-56 222.6 148 77.7
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.3e-55 220.3 148 77.0
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 9.1e-52 208.4 154 71.4
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 9.1e-52 208.4 154 71.4
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 8.0e-48 195.3 108 93.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 5.9e-35 152.5 102 78.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.0e-34 151.8 99 79.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.0e-30 137.5 113 63.7
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 9.8e-30 135.2 149 54.4
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 8.9e-23 112.1 102 63.7
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 1.7e-21 107.8 61 88.5
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 2.9e-21 107.1 64 89.1


User provided reference genes

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