Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 3.7e-158 561.6 305 100.0
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.4e-141 506.5 305 89.8
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.2e-135 486.9 304 87.8
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.1e-133 480.3 304 86.8
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.1e-133 480.3 304 86.8
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 2.7e-132 475.7 304 85.9
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.6e-113 413.3 305 73.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 1.0e-107 394.0 305 71.1
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 6.8e-104 381.3 304 69.1
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 4.4e-103 378.6 304 68.8
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 9.8e-103 377.5 291 71.8
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 8.3e-102 374.4 304 68.1
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 1.1e-101 374.0 305 68.5
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 1.4e-101 373.6 304 68.8
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.5e-98 363.6 304 66.1
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 1.9e-98 363.2 302 65.2
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.6e-97 360.1 305 64.6
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 2.8e-97 359.4 304 64.8
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 4.7e-97 358.6 304 65.1
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 8.1e-97 357.8 305 64.3
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 4.0e-96 355.5 304 62.8
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 6.8e-96 354.8 306 63.7
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.2e-95 354.0 305 63.6
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 3.4e-95 352.4 328 63.4
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 5.8e-95 351.7 302 64.2
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 7.5e-95 351.3 302 64.2
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 2.2e-94 349.7 305 63.0
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 6.4e-94 348.2 306 63.1
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 8.3e-94 347.8 302 63.6
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 8.3e-94 347.8 309 64.4
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.1e-93 347.4 347 57.9
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.1e-93 347.4 305 62.0
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 1.4e-93 347.1 310 62.3
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 1.9e-93 346.7 304 62.2
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 2.4e-93 346.3 305 63.0
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 4.1e-93 345.5 306 64.4
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 5.4e-93 345.1 305 63.3
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.2e-92 344.0 303 64.4
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.1e-92 343.2 304 61.8
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.7e-92 342.8 307 65.1
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 6.0e-92 341.7 367 56.9
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 7.8e-92 341.3 304 60.9
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 6.6e-91 338.2 304 60.5
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.5e-90 337.0 304 60.5
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.5e-90 337.0 304 62.8
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 3.3e-90 335.9 304 62.2
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 3.3e-90 335.9 304 60.9
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 3.3e-90 335.9 304 61.2
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 5.6e-90 335.1 304 63.2
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 1.2e-89 334.0 306 60.1
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 2.1e-89 333.2 302 60.9
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 2.1e-89 333.2 287 63.4
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 3.6e-89 332.4 304 61.5
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.0e-87 326.6 302 59.6
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 3.4e-87 325.9 302 58.9
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.4e-87 325.9 302 58.9
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.4e-87 325.9 302 58.9
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 1.3e-86 323.9 287 62.0
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.2e-86 323.2 302 58.9
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 4.9e-86 322.0 302 59.3
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 1.1e-85 320.9 302 59.3
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 1.1e-85 320.9 304 60.9
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.4e-85 319.7 301 60.8
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 5.4e-85 318.5 288 63.9
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.1e-85 318.2 302 57.9
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.2e-84 317.4 314 58.6
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.1e-84 316.6 304 59.5
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 2.7e-84 316.2 308 60.4
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 6.0e-84 315.1 307 61.2
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 6.0e-84 315.1 309 58.3
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.3e-83 313.9 306 60.5
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 5.1e-83 312.0 304 55.3
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 8.6e-83 311.2 271 66.8
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 1.1e-82 310.8 304 58.2
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 5.6e-82 308.5 283 61.8
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 9.6e-82 307.8 315 57.5
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 4.7e-81 305.4 305 58.7
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.8e-80 303.5 297 58.6
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 6.9e-80 301.6 305 54.8
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 8.9e-80 301.2 304 56.9
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.4e-79 299.3 306 54.6
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 7.6e-79 298.1 306 56.2
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 6.4e-78 295.0 308 53.9
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.4e-77 293.9 310 52.6
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.9e-77 293.5 305 53.1
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 3.2e-77 292.7 305 53.8
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.2e-76 290.8 313 54.3
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 6.6e-75 285.0 305 52.5
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.9e-74 283.5 306 53.3
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 4.3e-74 282.3 294 53.7
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 4.3e-74 282.3 307 52.8
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 7.3e-74 281.6 304 53.6
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 2.8e-73 279.6 305 51.5
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 4.8e-73 278.9 305 51.5
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.4e-72 277.3 306 52.0
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.8e-72 276.9 304 53.0
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 4.0e-72 275.8 306 53.6
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.2e-71 274.2 308 50.6
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 4.5e-71 272.3 307 51.8
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 4.5e-71 272.3 309 52.8
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 9.9e-71 271.2 307 51.1
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.7e-70 270.4 307 51.1
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 3.8e-70 269.2 306 50.3
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.1e-66 257.7 306 50.0
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.6e-65 253.8 243 58.0
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 6.2e-65 251.9 238 59.2
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 8.1e-65 251.5 235 62.6
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.4e-64 250.8 245 58.8
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 4.0e-64 249.2 299 50.8
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.5e-63 247.3 274 52.9
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 2.6e-63 246.5 301 49.5
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 5.8e-63 245.4 301 49.5
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.8e-62 242.7 246 59.3
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 3.8e-62 242.7 291 50.2
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.4e-61 240.7 305 45.2
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 2.7e-60 236.5 308 47.4
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 3.1e-56 223.0 318 44.0
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.2e-55 221.1 306 43.8
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 4.9e-54 215.7 236 51.7
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.9e-53 213.8 289 43.6
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.5e-53 213.4 290 43.8
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.2e-52 211.1 236 55.5
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 2.5e-50 203.4 306 41.8
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.6e-49 200.7 299 43.1
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 5.1e-43 179.1 294 42.9
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 4.5e-39 166.0 290 40.0
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 2.9e-38 163.3 186 53.2
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 3.6e-36 156.4 238 43.3
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 2.4e-32 143.7 151 59.6
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 6.5e-30 135.6 306 33.0
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.1e-29 134.8 194 44.8
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 5.5e-29 132.5 175 50.9
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 5.7e-26 122.5 363 29.2
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 7.5e-18 95.5 70 74.3
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 4.8e-17 92.8 69 66.7
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 1.8e-16 90.9 310 27.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 5.5e-13 79.3 214 30.8
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 3.5e-07 60.1 131 33.6
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.7e-06 57.8 216 26.4


User provided reference genes

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