Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.4e-226 789.3 392 100.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 4.8e-211 737.6 405 91.6
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 1.0e-208 729.9 405 90.4
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.0e-208 729.9 405 90.4
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 6.5e-208 727.2 405 90.1
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 4.4e-204 714.5 378 94.4
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.0e-200 703.4 405 86.9
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 4.0e-197 691.4 405 85.7
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 7.5e-196 687.2 405 84.7
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 9.7e-196 686.8 405 84.4
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 9.7e-196 686.8 405 84.0
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.3e-195 686.4 405 84.9
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.7e-195 686.0 405 84.4
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 2.8e-195 685.3 405 84.4
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 3.7e-195 684.9 405 84.2
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 1.1e-194 683.3 404 83.9
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 3.1e-194 681.8 403 83.9
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 4.1e-194 681.4 351 96.3
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 9.1e-194 680.2 405 84.0
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 9.1e-194 680.2 402 83.8
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.6e-193 679.5 405 83.0
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 2.0e-193 679.1 405 84.7
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.9e-193 677.6 405 84.4
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.0e-192 676.8 405 84.2
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.7e-192 676.0 405 83.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.7e-192 676.0 405 84.2
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.7e-192 676.0 405 82.5
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.8e-192 674.9 405 84.0
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 3.8e-192 674.9 405 83.0
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 5.0e-192 674.5 405 82.5
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 5.0e-192 674.5 405 83.0
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 6.5e-192 674.1 393 84.5
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.1e-191 673.3 405 82.7
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.1e-191 673.3 405 82.5
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 1.1e-191 673.3 405 83.7
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.1e-191 673.3 405 83.0
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 1.5e-191 672.9 405 82.7
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.5e-191 672.9 413 81.1
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.5e-191 672.9 405 83.7
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.5e-191 672.9 404 82.4
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.9e-191 672.5 405 82.7
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 1.9e-191 672.5 405 83.0
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.5e-191 672.2 405 83.0
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 2.5e-191 672.2 421 82.2
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 5.5e-191 671.0 405 82.7
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 5.5e-191 671.0 405 83.5
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 9.4e-191 670.2 405 82.7
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.2e-190 669.8 405 82.5
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 2.1e-190 669.1 405 82.2
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 2.1e-190 669.1 405 82.2
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.1e-190 669.1 415 81.4
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 2.1e-190 669.1 405 82.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.7e-190 668.7 405 83.0
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 2.7e-190 668.7 405 82.5
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 1.0e-189 666.8 405 81.5
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.4e-189 666.4 405 82.2
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.3e-189 665.6 405 81.7
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 3.0e-189 665.2 405 81.5
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 3.0e-189 665.2 405 82.2
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 3.0e-189 665.2 405 80.7
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 4.0e-189 664.8 405 81.7
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 6.8e-189 664.1 405 81.7
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 6.8e-189 664.1 405 82.0
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 1.5e-188 662.9 405 81.5
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 2.0e-188 662.5 405 81.2
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.0e-188 662.5 413 80.9
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 2.6e-188 662.1 405 81.2
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 2.6e-188 662.1 405 82.2
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.6e-188 662.1 405 81.2
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 3.4e-188 661.8 405 81.0
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 3.4e-188 661.8 405 81.2
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.4e-188 661.4 413 80.6
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 4.4e-188 661.4 405 81.7
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-187 659.8 425 78.4
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 3.7e-187 658.3 405 81.0
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 6.3e-187 657.5 407 80.8
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 8.3e-187 657.1 405 80.5
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.4e-186 656.4 397 82.9
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.8e-186 656.0 407 80.8
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 4.1e-186 654.8 404 80.2
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.7e-185 652.1 431 76.1
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.0e-184 650.2 402 80.3
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.2e-184 649.0 406 80.0
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 7.2e-183 644.0 412 79.6
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 7.2e-183 644.0 386 83.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 1.8e-181 639.4 433 76.0
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 5.7e-180 634.4 431 77.0
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 3.7e-179 631.7 405 77.5
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.8e-178 629.4 418 75.6
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.2e-177 626.7 405 76.0
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 5.9e-177 624.4 420 75.5
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 7.7e-177 624.0 400 77.2
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.0e-176 623.6 399 76.7
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.7e-176 622.9 405 79.5
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 5.6e-175 617.8 397 78.1
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.5e-175 617.1 405 78.8
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.2e-174 616.7 392 79.8
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.4e-173 613.2 449 70.8
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.1e-170 603.6 398 76.6
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 1.4e-170 603.2 444 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 9.2e-170 600.5 407 73.0
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 4.6e-169 598.2 353 83.3
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.1e-167 593.6 398 76.4
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.9e-167 592.8 393 76.8
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 4.0e-165 585.1 407 71.7
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.2e-164 583.6 405 73.8
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 3.4e-164 582.0 407 70.8
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 2.9e-163 578.9 402 71.6
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 5.4e-162 574.7 412 69.9
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 8.9e-157 557.4 390 73.8
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 9.8e-156 553.9 349 81.1
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 4.6e-153 545.0 408 71.6
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.7e-152 543.1 395 74.4
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.5e-151 540.0 329 81.2
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 7.3e-151 537.7 364 75.8
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 2.2e-147 526.2 342 79.5
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 8.4e-139 497.7 291 81.4
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 1.5e-135 486.9 426 59.6
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 3.3e-135 485.7 397 62.7
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 2.5e-127 459.5 265 86.8
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 3.2e-122 442.6 408 58.1
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 7.4e-119 431.4 381 59.8
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.2e-47 194.9 123 78.9
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.0e-43 181.8 161 62.7
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.1e-40 171.8 88 92.0
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 2.2e-30 137.5 319 32.6
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 2.3e-27 127.5 134 53.7
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 8.6e-27 125.6 73 87.7
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 2.5e-26 124.0 317 31.9
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 6.0e-20 102.8 55 76.4
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 7.8e-20 102.4 55 78.2
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.3e-19 100.9 58 84.5
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 2.5e-18 97.4 57 78.9
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 9.6e-18 95.5 54 72.2
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 5.4e-13 79.7 126 41.3
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 2.1e-12 77.8 107 44.9
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 1.3e-11 75.1 46 65.2
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 9.6e-10 68.9 70 61.4
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 3.1e-08 63.9 42 71.4
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 9.9e-07 58.9 55 58.2
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 2.9e-06 57.4 112 36.6


User provided reference genes

Program Settings