Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.0e-117 425.2 222 100.0
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 5.5e-111 404.4 226 95.1
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.9e-96 355.5 209 85.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.9e-96 355.5 209 85.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.9e-95 352.8 207 85.5
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 3.9e-93 345.1 203 85.2
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 6.3e-91 337.8 212 78.3
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-90 337.0 210 79.5
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.4e-90 336.7 211 79.1
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.4e-90 335.9 209 78.9
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 3.1e-90 335.5 226 79.6
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.5e-89 333.2 226 75.2
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 5.9e-89 331.3 229 73.8
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.2e-88 329.3 216 77.3
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.8e-88 328.6 231 72.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.8e-88 328.6 227 77.1
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.0e-88 328.2 212 79.2
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.5e-88 327.8 212 78.8
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 8.5e-88 327.4 221 76.0
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.1e-87 327.0 227 72.7
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.5e-87 325.9 230 77.8
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 3.2e-87 325.5 211 74.9
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.2e-87 325.5 211 75.4
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.2e-87 325.1 211 76.8
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 5.5e-87 324.7 212 77.8
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 7.2e-87 324.3 215 76.3
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 7.2e-87 324.3 213 77.5
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.4e-87 323.9 211 79.1
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.6e-86 323.2 228 72.8
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.1e-86 322.8 212 76.4
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.6e-86 322.0 199 79.4
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 3.6e-86 322.0 200 78.0
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 6.1e-86 321.2 229 75.5
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 6.1e-86 321.2 234 72.2
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 6.1e-86 321.2 222 75.7
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 7.9e-86 320.9 230 71.7
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.0e-85 320.5 212 77.4
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.0e-85 320.5 212 75.9
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.0e-85 320.5 212 75.9
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.4e-85 320.1 211 76.8
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.4e-85 320.1 213 73.7
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.8e-85 319.7 195 79.0
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 2.3e-85 319.3 203 77.3
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.0e-85 318.9 230 73.0
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.9e-85 318.5 207 76.3
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.9e-85 318.5 211 74.4
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 5.1e-85 318.2 220 74.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.1e-85 318.2 236 74.2
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.1e-85 318.2 236 74.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 6.7e-85 317.8 216 73.6
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.1e-84 317.0 214 74.8
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.5e-84 316.6 235 71.9
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.5e-84 316.6 235 71.9
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.5e-84 316.6 214 73.4
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.0e-84 316.2 213 77.0
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.0e-84 316.2 210 76.2
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-84 316.2 235 71.9
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-84 316.2 235 71.9
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 3.3e-84 315.5 235 71.5
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.4e-84 314.3 235 71.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 9.7e-84 313.9 211 74.4
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 1.3e-83 313.5 212 75.9
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 1.3e-83 313.5 212 75.9
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.3e-83 313.5 192 80.2
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.3e-83 313.5 212 73.6
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.7e-83 312.0 229 73.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.1e-82 310.5 212 76.4
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.1e-82 310.5 212 73.1
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.8e-82 309.7 234 67.5
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.8e-82 309.7 215 72.1
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.1e-82 308.5 189 77.2
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.2e-81 307.0 194 77.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.9e-81 304.7 203 72.9
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 5.0e-80 301.6 216 69.9
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 6.5e-80 301.2 230 70.4
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 8.5e-80 300.8 209 72.7
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.5e-79 300.1 198 75.3
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.9e-79 299.7 212 70.8
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 2.5e-79 299.3 226 65.9
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.5e-79 299.3 211 72.0
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 5.5e-79 298.1 201 76.1
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 9.4e-79 297.4 195 73.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.6e-78 296.6 198 72.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 4.7e-78 295.0 227 72.2
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 4.0e-77 292.0 223 70.9
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 8.8e-77 290.8 223 70.4
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.3e-75 287.0 214 69.2
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.3e-75 287.0 188 74.5
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 3.7e-75 285.4 220 74.5
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.4e-74 283.5 220 73.6
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 5.9e-73 278.1 200 69.0
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.0e-72 277.3 188 72.3
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 3.8e-72 275.4 191 72.8
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.8e-72 275.4 218 64.7
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.5e-72 274.6 204 68.1
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.1e-71 273.9 202 71.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.9e-71 273.1 208 66.8
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.5e-71 272.7 202 70.3
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.5e-71 272.7 202 70.3
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.2e-71 272.3 202 70.8
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 5.5e-71 271.6 199 70.4
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 7.2e-71 271.2 200 71.0
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 7.2e-71 271.2 202 70.3
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 9.4e-71 270.8 200 70.5
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.2e-70 270.4 201 67.2
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.6e-70 270.0 202 69.3
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.1e-70 269.6 202 69.3
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 3.6e-70 268.9 202 69.3
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.1e-70 268.1 191 68.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.0e-69 267.3 201 65.7
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.0e-69 265.8 189 73.0
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-69 265.8 204 68.6
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 4.0e-69 265.4 200 64.0
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 4.0e-69 265.4 204 68.6
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 4.0e-69 265.4 204 68.6
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 4.0e-69 265.4 204 68.6
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 6.8e-69 264.6 228 63.2
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.5e-68 263.5 204 68.1
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.0e-68 263.1 183 69.9
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.2e-67 259.6 190 67.4
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.8e-67 259.2 196 67.9
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.1e-66 255.8 197 65.0
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.5e-63 246.9 191 66.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 3.0e-61 239.2 221 60.6
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.2e-60 237.3 145 80.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 2.7e-57 226.1 216 60.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 4.5e-57 225.3 159 73.0
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.5e-55 220.3 195 55.4
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.5e-55 219.5 164 70.1
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.6e-54 216.9 159 69.2
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 4.6e-49 198.7 221 52.9
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 5.0e-48 195.3 112 83.9
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 8.9e-45 184.5 127 74.8
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.0e-44 183.3 197 53.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.9e-43 179.5 115 71.3
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.3e-40 170.6 102 76.5
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 5.0e-40 168.7 104 77.9
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.8e-37 160.2 92 80.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.4e-20 102.4 62 77.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.7e-16 90.5 96 52.1
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.1e-06 57.0 130 29.2


User provided reference genes

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