Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.5e-124 449.5 222 100.0
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.8e-85 319.7 179 86.0
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 2.6e-81 305.8 174 84.5
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 1.0e-80 303.9 174 84.5
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 1.3e-80 303.5 174 83.9
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 2.9e-80 302.4 171 84.8
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 4.2e-79 298.5 171 81.9
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.2e-78 297.0 191 77.5
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 2.1e-78 296.2 171 81.3
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 3.0e-77 292.4 169 81.7
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.7e-76 288.1 210 69.5
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 1.8e-74 283.1 171 77.8
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 3.1e-74 282.3 171 76.6
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 5.3e-74 281.6 169 77.5
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 1.6e-73 280.0 172 76.7
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 2.0e-73 279.6 169 76.3
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 3.5e-73 278.9 169 77.5
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.5e-73 278.5 151 86.1
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 7.7e-73 277.7 169 78.7
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 1.0e-72 277.3 172 76.2
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 1.7e-72 276.6 173 75.7
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 2.2e-72 276.2 173 75.7
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 5.0e-72 275.0 173 75.1
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 5.0e-72 275.0 170 76.5
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 5.0e-72 275.0 173 75.7
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 6.5e-72 274.6 171 75.4
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 8.5e-72 274.2 173 75.7
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 8.5e-72 274.2 170 75.9
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 8.5e-72 274.2 171 75.4
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.1e-71 273.9 170 75.9
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 1.1e-71 273.9 156 83.3
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.5e-71 273.5 173 75.7
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 1.9e-71 273.1 172 75.6
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 1.9e-71 273.1 171 74.9
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 1.9e-71 273.1 175 76.0
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 1.9e-71 273.1 175 76.0
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 4.2e-71 271.9 171 75.4
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 4.2e-71 271.9 173 74.6
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 5.5e-71 271.6 172 74.4
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 5.5e-71 271.6 171 74.9
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 7.2e-71 271.2 174 73.0
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 7.2e-71 271.2 170 75.3
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 9.4e-71 270.8 172 75.6
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 1.2e-70 270.4 169 75.7
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 2.1e-70 269.6 170 74.7
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 2.7e-70 269.2 170 75.9
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 2.7e-70 269.2 175 71.4
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.7e-70 269.2 169 74.0
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 2.7e-70 269.2 169 76.9
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 3.6e-70 268.9 168 75.0
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 4.7e-70 268.5 168 75.0
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 4.7e-70 268.5 168 75.0
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 8.0e-70 267.7 169 74.0
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 8.0e-70 267.7 171 74.3
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 1.0e-69 267.3 173 72.3
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 1.0e-69 267.3 169 75.7
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 1.4e-69 266.9 169 74.0
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.4e-69 266.9 170 73.5
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 1.4e-69 266.9 169 75.7
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 2.3e-69 266.2 171 73.7
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 4.0e-69 265.4 174 71.8
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 4.0e-69 265.4 169 72.8
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 5.2e-69 265.0 171 71.9
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 8.8e-69 264.2 171 77.2
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 1.5e-68 263.5 171 71.3
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 5.7e-68 261.5 157 79.6
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 5.7e-68 261.5 169 74.0
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 5.7e-68 261.5 168 71.4
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 9.8e-68 260.8 169 74.0
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 9.8e-68 260.8 169 71.6
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 9.8e-68 260.8 188 69.1
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 1.3e-67 260.4 172 73.3
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 1.3e-67 260.4 171 71.3
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 1.3e-67 260.4 169 74.6
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 1.3e-67 260.4 168 72.6
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 2.2e-67 259.6 175 72.6
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 1.1e-66 257.3 169 71.6
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 1.4e-66 256.9 168 72.0
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 2.4e-66 256.1 173 70.5
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 4.1e-66 255.4 169 72.8
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 5.4e-66 255.0 172 69.8
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 7.0e-66 254.6 216 60.2
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 7.0e-66 254.6 169 71.6
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 9.1e-66 254.2 166 72.9
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 9.1e-66 254.2 173 71.1
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 1.2e-65 253.8 195 62.1
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 1.6e-65 253.4 169 71.0
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 2.0e-65 253.1 169 71.6
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 2.0e-65 253.1 168 71.4
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 2.7e-65 252.7 169 70.4
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 3.5e-65 252.3 168 70.8
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 3.5e-65 252.3 169 70.4
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 5.9e-65 251.5 169 68.6
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 5.9e-65 251.5 171 70.2
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 7.7e-65 251.1 168 70.8
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 1.0e-64 250.8 169 69.8
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 1.3e-64 250.4 169 70.4
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 1.7e-64 250.0 164 72.0
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 1.7e-64 250.0 151 76.8
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 2.2e-64 249.6 169 70.4
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 2.9e-64 249.2 169 69.8
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 3.8e-64 248.8 169 69.8
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 3.8e-64 248.8 168 68.5
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 6.5e-64 248.1 166 71.1
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 1.1e-63 247.3 175 69.1
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 4.2e-63 245.4 175 67.4
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 5.5e-63 245.0 168 67.3
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 5.5e-63 245.0 168 67.3
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 2.1e-62 243.0 156 73.7
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.1e-62 243.0 175 66.3
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 3.6e-62 242.3 169 68.6
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 6.1e-62 241.5 152 77.6
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 4.0e-61 238.8 209 55.5
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 1.7e-59 233.4 173 67.1
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 2.2e-59 233.0 152 71.7
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 2.8e-59 232.6 151 72.8
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 2.8e-59 232.6 151 72.8
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 6.3e-59 231.5 166 63.9
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 3.6e-54 215.7 151 68.9
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 3.6e-54 215.7 151 68.9
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 2.6e-52 209.5 167 58.7
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 4.9e-51 205.3 170 62.4
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.4e-50 203.0 117 80.3
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.0e-45 185.7 118 76.3
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 1.7e-43 180.3 156 59.0
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 6.4e-43 178.3 164 49.4
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 8.3e-43 177.9 125 67.2
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 3.2e-42 176.0 171 48.5
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 3.2e-42 176.0 114 73.7
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 5.4e-42 175.3 155 55.5
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 7.0e-42 174.9 96 84.4
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 8.6e-40 167.9 119 71.4
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 8.6e-40 167.9 162 48.1
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.2e-38 164.1 170 52.4
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 3.6e-38 162.5 168 50.6
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 4.7e-38 162.2 224 41.5
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 3.1e-37 159.5 195 47.2
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 4.4e-36 155.6 96 78.1
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 3.7e-35 152.5 108 63.0
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 3.7e-35 152.5 108 63.0
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 1.1e-34 151.0 164 44.5
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 3.2e-34 149.4 116 62.1
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 1.9e-26 123.6 171 36.8
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 6.0e-25 118.6 90 61.1
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 5.8e-20 102.1 54 87.0
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 1.3e-19 100.9 162 36.4
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 5.6e-15 85.5 54 75.9
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 7.6e-12 75.1 61 63.9
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 1.1e-10 71.2 60 61.7
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 4.6e-09 65.9 37 81.1
AUR62017074 Chenopodium quinoa HOM05D004609 ORTHO05D005537 6.0e-09 65.5 104 38.5


User provided reference genes

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