Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.1e-128 463.4 244 100.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 8.1e-108 394.0 245 86.1
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 4.5e-106 388.3 245 85.3
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.4e-104 382.5 245 84.5
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 2.3e-102 375.9 276 76.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.6e-98 362.5 239 84.9
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.1e-83 313.9 248 71.0
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.1e-80 303.9 244 68.4
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.2e-80 302.0 249 67.1
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.3e-76 290.4 247 66.0
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.7e-76 290.0 245 64.9
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.8e-75 286.6 245 67.3
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 3.1e-75 285.8 248 66.5
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.1e-75 285.4 244 66.4
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.1e-75 284.3 245 66.9
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.6e-74 282.7 250 64.0
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.7e-73 280.0 244 65.6
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 6.5e-73 278.1 245 65.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.4e-72 276.9 245 66.1
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 7.2e-72 274.6 245 65.3
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 7.2e-72 274.6 244 65.2
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.2e-71 273.9 258 62.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 4.7e-71 271.9 255 62.4
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 3.9e-70 268.9 246 63.4
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 9.7e-69 264.2 244 66.0
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 9.7e-69 264.2 250 60.0
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.7e-68 263.5 248 60.9
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.8e-68 262.7 246 64.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 3.7e-68 262.3 257 59.5
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 4.8e-68 261.9 195 73.3
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 4.8e-68 261.9 244 62.7
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 4.8e-68 261.9 244 63.5
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 4.8e-68 261.9 244 63.5
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 6.3e-68 261.5 245 62.9
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 6.3e-68 261.5 219 67.6
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.4e-67 260.4 251 61.0
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.8e-67 260.0 248 63.3
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 3.1e-67 259.2 244 63.9
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 4.1e-67 258.8 251 62.2
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 5.3e-67 258.5 244 60.2
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 9.1e-67 257.7 237 63.3
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.2e-66 257.3 244 62.7
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.4e-66 255.8 247 61.9
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 4.5e-66 255.4 206 67.5
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 7.7e-66 254.6 253 61.3
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.0e-65 254.2 258 59.7
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.3e-65 253.8 258 58.1
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.3e-65 253.8 245 60.4
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.9e-65 252.7 245 60.0
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.9e-65 252.7 258 58.5
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.8e-65 252.3 248 60.1
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 5.0e-65 251.9 240 62.9
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.1e-64 250.8 248 59.3
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.4e-64 250.4 241 60.6
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.4e-64 250.4 227 63.9
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.9e-64 250.0 246 61.4
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 5.5e-64 248.4 238 61.3
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 9.4e-64 247.7 241 60.2
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 9.4e-64 247.7 251 59.4
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.1e-63 246.5 241 59.8
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.7e-63 246.1 246 59.8
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 2.7e-63 246.1 244 61.1
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 4.7e-63 245.4 245 57.6
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 4.7e-63 245.4 245 57.6
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 6.1e-63 245.0 245 56.3
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 6.1e-63 245.0 262 56.1
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.8e-62 243.4 183 71.0
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 3.0e-62 242.7 249 56.2
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 3.9e-62 242.3 244 57.0
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 8.8e-62 241.1 242 59.9
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 8.8e-62 241.1 277 56.0
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.1e-61 240.7 192 68.2
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.1e-61 240.7 245 56.7
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.5e-61 240.4 193 68.9
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.6e-61 239.6 244 57.8
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.6e-61 239.6 245 56.3
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 2.6e-61 239.6 213 63.8
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 3.3e-61 239.2 245 56.7
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 4.4e-61 238.8 211 65.9
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 5.7e-61 238.4 226 60.6
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 7.4e-61 238.0 245 56.3
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 7.4e-61 238.0 244 59.4
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.7e-60 236.9 174 73.6
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.2e-60 236.5 318 49.4
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.8e-60 236.1 244 55.3
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 2.8e-60 236.1 248 58.5
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 4.8e-60 235.3 202 67.3
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.1e-59 234.2 255 54.9
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.4e-59 233.8 231 60.2
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 7.0e-59 231.5 249 55.8
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.2e-58 230.7 189 67.7
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.6e-58 230.3 235 60.0
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.0e-58 229.9 243 58.0
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.0e-58 229.9 243 58.0
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 4.5e-58 228.8 245 54.7
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 2.9e-57 226.1 245 54.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.9e-56 223.4 251 55.8
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.2e-55 220.7 211 59.2
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 5.2e-54 215.3 212 59.9
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 2.0e-53 213.4 264 52.3
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.7e-52 210.3 174 66.7
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.6e-50 203.8 188 61.7
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 2.0e-50 203.4 246 53.7
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.7e-49 200.3 199 55.3
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 2.2e-49 199.9 192 59.4
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.9e-49 199.5 213 57.3
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.2e-48 196.1 244 53.7
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 3.0e-46 189.5 154 67.5
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.3e-41 173.3 137 73.7
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.6e-41 171.8 245 47.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 8.6e-41 171.4 186 52.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.3e-40 169.5 154 60.4
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 8.9e-38 161.4 184 52.2
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.7e-36 157.1 226 46.5
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 7.8e-34 148.3 266 41.4
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.0e-30 136.0 109 65.1
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 5.2e-30 135.6 225 41.3
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 8.9e-30 134.8 227 41.9
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.2e-29 134.4 227 41.4
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.0e-29 133.7 109 64.2
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.8e-29 132.1 109 63.3
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.9e-28 129.8 161 49.7
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.9e-28 129.0 212 41.5
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 6.4e-28 128.6 171 46.8
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 9.2e-27 124.8 103 62.1
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.7e-25 120.6 129 51.9
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 8.6e-25 118.2 142 49.3
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.1e-24 117.9 153 49.7
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 9.5e-24 114.8 97 67.0
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 6.8e-22 108.6 116 50.0
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.6e-21 106.7 79 65.8
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 9.8e-21 104.8 103 53.4
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.9e-20 103.2 82 64.6
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.9e-20 102.4 205 38.0
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 3.3e-16 89.7 142 40.1
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.1e-14 83.2 141 39.0
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 5.2e-14 82.4 111 48.6
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.1e-11 74.7 166 35.5
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.9e-11 73.9 53 73.6
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.0e-09 68.2 99 42.4
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 5.6e-08 62.4 53 67.9
PGSC0003DMG400034336 Solanum tuberosum HOM05D035092 ORTHO05D036869 1.1e-06 58.2 31 83.9


User provided reference genes

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