Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 5.2e-218 760.8 387 100.0
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 9.3e-207 723.4 379 96.6
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 2.0e-193 679.1 379 89.7
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 1.7e-192 676.0 379 88.7
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 1.7e-192 676.0 379 89.2
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 3.4e-169 598.6 379 77.0
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.8e-165 586.3 379 74.4
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 7.4e-164 580.9 379 78.6
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 1.4e-159 566.6 384 70.1
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 2.1e-158 562.8 376 72.9
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 8.0e-158 560.8 376 71.5
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 2.3e-157 559.3 382 72.0
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 1.5e-156 556.6 376 71.8
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 9.7e-156 553.9 375 70.1
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.3e-155 553.5 361 74.0
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 3.1e-154 548.9 379 70.7
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 3.1e-154 548.9 376 70.2
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 4.1e-154 548.5 375 70.7
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 5.3e-154 548.1 376 70.5
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 7.0e-154 547.7 376 69.4
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 7.7e-153 544.3 376 69.7
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.3e-152 543.5 376 70.5
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 2.2e-152 542.7 376 69.1
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 2.9e-152 542.3 375 70.4
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.8e-152 542.0 375 68.5
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 3.8e-152 542.0 376 69.9
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 5.0e-152 541.6 377 70.0
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 5.0e-152 541.6 377 70.3
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 6.5e-152 541.2 376 69.4
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.9e-151 539.7 375 68.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.9e-151 539.7 379 67.0
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 1.9e-151 539.7 375 69.3
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.6e-150 535.4 375 67.7
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 6.1e-150 534.6 378 67.2
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.0e-149 533.9 375 69.1
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.4e-149 533.5 375 68.3
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.8e-149 533.1 379 67.8
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 6.7e-149 531.2 381 68.2
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.2e-148 530.4 380 68.9
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 2.6e-148 529.3 429 63.4
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 3.3e-148 528.9 375 68.0
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 1.7e-147 526.6 379 65.2
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 2.8e-147 525.8 376 69.1
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 6.3e-147 524.6 376 69.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.8e-146 523.1 379 67.8
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.4e-146 522.7 382 67.0
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 4.1e-146 521.9 376 67.0
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 5.3e-146 521.5 380 66.8
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.2e-145 520.4 382 67.3
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.7e-145 517.7 385 64.7
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 2.9e-144 515.8 376 66.0
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 6.5e-144 514.6 380 66.6
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 1.5e-143 513.5 375 67.2
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 1.9e-143 513.1 375 66.4
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 3.2e-143 512.3 379 63.1
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.6e-142 510.0 373 66.0
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 2.1e-142 509.6 379 62.5
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 2.7e-142 509.2 380 61.6
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 1.0e-141 507.3 380 61.8
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.4e-141 506.9 379 62.8
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 1.8e-141 506.5 379 62.5
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.8e-141 506.5 375 64.5
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 2.3e-141 506.1 373 66.0
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 2.3e-141 506.1 375 65.6
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 4.0e-141 505.4 380 61.8
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 4.0e-141 505.4 378 64.8
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 5.2e-141 505.0 380 61.8
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 6.8e-141 504.6 379 62.0
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 1.2e-140 503.8 380 61.6
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 1.2e-140 503.8 380 61.6
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 1.2e-140 503.8 379 61.7
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.5e-140 503.4 375 65.3
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 2.6e-140 502.7 382 62.3
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 2.8e-139 499.2 379 62.8
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.1e-138 497.3 379 62.8
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 3.1e-138 495.7 379 62.5
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 5.4e-138 495.0 381 63.0
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 5.0e-136 488.4 406 60.3
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 6.6e-136 488.0 380 62.4
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 6.6e-136 488.0 377 63.4
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.5e-135 486.9 376 60.9
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 4.2e-135 485.3 398 61.6
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 3.6e-134 482.3 427 56.7
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 1.5e-132 476.9 375 64.0
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 9.8e-132 474.2 365 64.9
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 6.6e-128 461.5 376 58.5
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 5.2e-125 451.8 379 60.2
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 2.9e-123 446.0 375 60.3
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 9.2e-122 441.0 375 57.9
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 3.5e-121 439.1 368 56.2
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 7.3e-119 431.4 316 65.8
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 2.9e-115 419.5 386 56.7
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 1.3e-107 394.0 266 70.3
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 7.3e-103 378.3 376 48.7
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 7.3e-103 378.3 372 51.6
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 5.2e-101 372.1 272 65.1
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 1.2e-92 344.4 406 47.5
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 2.1e-89 333.6 280 59.6
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 1.2e-84 317.8 191 78.0
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 2.2e-83 313.5 370 43.8
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 5.3e-77 292.4 263 58.9
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.3e-70 271.2 368 39.9
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.5e-52 211.1 223 49.3
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.5e-52 211.1 223 49.3
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.3e-51 208.0 166 62.0
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 3.6e-49 199.9 169 55.0
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 2.6e-47 193.7 138 64.5
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.8e-46 190.3 124 66.9
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 2.4e-45 187.2 379 38.5
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.5e-44 184.5 135 68.1
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.3e-43 181.4 112 70.5
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.2e-41 174.9 124 67.7
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.1e-33 147.5 110 71.8
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 3.6e-33 146.7 371 29.9
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 1.3e-30 138.3 119 56.3
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 3.0e-24 117.1 82 74.4
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 1.6e-20 104.8 350 26.0
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 2.3e-16 90.9 51 88.2
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 6.8e-16 89.4 51 80.4
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-15 88.2 52 84.6
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 3.4e-15 87.0 80 61.2
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 7.0e-13 79.3 74 58.1
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 1.2e-12 78.6 54 68.5
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 1.5e-10 71.6 114 44.7
Prupe.2G306700 Prunus persica HOM05D002314 ORTHO05D002538 1.2e-09 68.6 377 27.3
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 3.6e-09 67.0 36 88.9
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 4.7e-09 66.6 45 71.1
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 1.8e-08 64.7 48 64.6
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 5.2e-08 63.2 63 54.0
QL09p011009 Quercus lobata HOM05D002314 ORTHO05D002538 5.2e-08 63.2 380 26.1
HanXRQChr14g0462821 Helianthus annuus HOM05D002314 ORTHO05D002538 1.5e-07 61.6 372 26.1
HPP92_008643 Vanilla planifolia HOM05D002314 ORTHO05D002538 2.0e-07 61.2 146 32.2
COL.COLO4_35660 Corchorus olitorius HOM05D002314 ORTHO05D002538 3.4e-07 60.5 378 25.9
Gohir.A12G252000 Gossypium hirsutum HOM05D002314 ORTHO05D002538 3.4e-07 60.5 376 26.9
Gohir.D12G253500 Gossypium hirsutum HOM05D002314 ORTHO05D002538 3.4e-07 60.5 376 26.9
Gorai.008G271000 Gossypium raimondii HOM05D002314 ORTHO05D002538 3.4e-07 60.5 376 26.9
vmacro06578 Vaccinium macrocarpon HOM05D002314 ORTHO05D002538 3.4e-07 60.5 376 25.5
A07p45510 Brassica napus HOM05D001142 ORTHO05D004628 4.4e-07 60.1 283 25.8
BraA07t32053Z Brassica rapa HOM05D001142 ORTHO05D004628 4.4e-07 60.1 283 25.8
Sabra12G0021500 Salix brachista HOM05D002314 ORTHO05D002538 4.4e-07 60.1 221 27.6
C06p54340 Brassica napus HOM05D001142 ORTHO05D004628 5.8e-07 59.7 283 25.4
BolC6t40445H Brassica oleracea HOM05D001142 ORTHO05D004628 5.8e-07 59.7 283 25.4
TAR636G0809 Trochodendron aralioides HOM05D000883 ORTHO05D002942 5.8e-07 59.7 113 34.5
Lsat_1_v5_gn_2_134241 Lactuca sativa HOM05D002314 ORTHO05D002538 7.5e-07 59.3 381 26.2
GSVIVG01028734001 Vitis vinifera HOM05D002314 ORTHO05D002538 7.5e-07 59.3 379 25.1
DCAR_020299 Daucus carota HOM05D002314 ORTHO05D002538 9.8e-07 58.9 375 25.3
Thhalv10018951m.g Eutrema salsugineum HOM05D001142 ORTHO05D004628 9.8e-07 58.9 267 25.5
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 2.2e-06 57.8 39 69.2
CAN.G2846.2 Capsicum annuum HOM05D005972 ORTHO05D007548 2.2e-06 57.8 50 58.0
Gohir.A10G096600 Gossypium hirsutum HOM05D001367 ORTHO05D005289 2.2e-06 57.8 369 23.6
Rhsim12G0198700 Rhododendron simsii HOM05D001142 ORTHO05D004628 2.2e-06 57.8 362 23.5
TWI14G1422 Tripterygium wilfordii HOM05D002314 ORTHO05D002538 2.9e-06 57.4 379 25.6
TAR623G0958 Trochodendron aralioides HOM05D000883 ORTHO05D002942 3.7e-06 57.0 113 36.3
Dinv35304 Davidia involucrata HOM05D002314 ORTHO05D002538 4.9e-06 56.6 378 25.7
MBI06_g32760_MAGBIO Magnolia biondii HOM05D002314 ORTHO05D002538 4.9e-06 56.6 377 24.9
Potri.012G032100 Populus trichocarpa HOM05D002314 ORTHO05D002538 4.9e-06 56.6 371 24.5
Rhsim09G0203600 Rhododendron simsii HOM05D002314 ORTHO05D002538 4.9e-06 56.6 288 26.0
ATR0099G005 Amborella trichopoda HOM05D002314 ORTHO05D002538 6.4e-06 56.2 161 32.3
Cfa003835 Carpinus fangiana HOM05D002314 ORTHO05D002538 6.4e-06 56.2 161 29.8
Duzib068G0165 Durio zibethinus HOM05D002314 ORTHO05D002538 6.4e-06 56.2 374 25.4
Thecc.03G192300 Theobroma cacao HOM05D002314 ORTHO05D002538 6.4e-06 56.2 374 26.5
arahy.Tifrunner.gnm1.ann1.5D55UE Arachis hypogaea HOM05D001142 ORTHO05D004628 8.3e-06 55.8 278 25.2
arahy.Tifrunner.gnm1.ann1.5G9G3T Arachis hypogaea HOM05D001142 ORTHO05D004628 8.3e-06 55.8 278 25.2


User provided reference genes

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