Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1998.8 1047 100.0
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1645.6 1049 82.8
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1626.7 1041 82.9
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1620.5 1041 82.8
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1592.4 1040 81.1
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1515.7 960 84.3
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1327.8 1040 68.0
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1289.2 1054 65.5
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1276.9 1046 65.2
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1257.7 1050 63.9
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1241.5 1043 64.4
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1234.9 1037 63.0
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1232.6 1048 63.4
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1227.2 1042 64.1
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1224.9 1047 63.3
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1210.7 984 65.3
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1206.8 1041 61.0
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1206.8 1052 61.5
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1204.9 1046 62.6
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1195.6 1157 57.3
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1193.7 1057 62.2
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1192.2 1050 61.0
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1191.8 1050 60.7
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1188.3 1049 61.0
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1182.5 1053 62.2
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1181.4 1049 60.1
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1180.6 1059 61.2
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1180.2 1051 61.0
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1179.9 1019 62.1
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1178.7 1053 61.1
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1171.0 1053 59.5
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1169.5 1038 61.3
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1166.4 1047 60.2
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1165.6 1022 61.6
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1162.5 1048 59.2
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1161.4 1046 61.3
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1159.8 1060 59.7
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1159.8 1089 58.5
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1158.7 1042 60.3
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1158.3 1051 58.8
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1154.8 1052 60.0
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1153.3 1039 59.7
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1147.1 1049 59.1
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1144.8 1048 58.9
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1137.1 1006 59.3
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1136.3 1041 59.6
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1135.6 1045 58.7
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 1039 58.8
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1130.2 1045 58.4
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1129.0 1043 59.3
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1125.2 1059 58.6
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1123.6 1046 58.6
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1121.3 964 62.3
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1117.1 1051 59.2
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1116.3 1035 58.3
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1111.7 1034 58.4
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1111.3 1032 59.0
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1109.4 1043 56.9
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1108.2 1040 58.4
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1099.7 1044 57.3
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1095.5 1041 57.1
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1094.0 1063 57.6
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1091.3 1057 56.4
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1090.1 1043 57.2
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1087.0 1048 58.6
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 0.0e+00 1083.6 1056 58.0
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1082.0 1045 56.8
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 4.3e-310 1068.1 1048 56.5
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 1.6e-309 1066.2 1048 56.0
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 8.9e-308 1060.4 1047 56.1
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 1.5e-307 1059.7 1055 56.2
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 2.9e-306 1055.4 675 83.0
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 4.1e-305 1051.6 1051 56.0
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.7e-303 1046.2 1051 55.5
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 3.0e-303 1045.4 1059 55.1
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 4.7e-301 1038.1 1047 55.6
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 4.7e-301 1038.1 1047 55.6
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 4.0e-300 1035.0 1053 54.7
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 5.2e-300 1034.6 1053 54.5
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 4.4e-299 1031.6 1046 54.8
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.3e-298 1030.0 1054 55.2
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 7.0e-297 1024.2 1058 54.6
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 1.6e-296 1023.1 1058 54.6
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 1.5e-294 1016.5 1083 53.6
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 2.8e-293 1012.3 1046 52.9
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 4.7e-293 1011.5 1033 53.0
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 2.1e-280 969.5 1180 48.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.9e-274 949.1 867 57.3
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.6e-261 906.7 780 61.4
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.0e-259 899.8 780 61.3
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.4e-257 892.9 773 61.2
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 3.2e-257 892.5 785 59.9
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 1.6e-256 890.2 805 58.6
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 6.7e-255 884.8 1046 51.1
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 2.9e-250 869.4 777 59.6
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.7e-242 843.6 1048 48.5
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 9.7e-230 801.2 672 62.4
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 1.1e-228 797.7 1024 47.0
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 1.6e-216 757.3 586 67.2
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.6e-195 687.6 634 56.8
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 2.7e-195 686.8 1038 40.3
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 4.0e-191 672.9 591 58.5
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.1e-176 624.0 716 48.6
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 2.6e-174 617.1 948 39.2
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 4.9e-173 612.8 918 40.5
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 6.0e-155 552.7 1012 37.0
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.8e-152 543.1 429 65.5
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 7.6e-142 509.2 677 47.0
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 6.7e-98 363.2 806 37.2
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 5.5e-92 343.6 317 55.2
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 4.4e-89 334.0 374 50.5
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 3.1e-87 327.8 299 64.2
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.0e-86 325.1 248 66.9
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 4.0e-82 310.8 247 66.8
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 7.5e-81 306.6 396 46.5
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-73 281.6 1673 21.5
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 2.3e-69 268.5 303 48.2
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 3.6e-67 261.2 204 64.2
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 3.4e-65 254.6 1071 25.0
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 9.5e-60 236.5 931 27.3
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 3.1e-58 231.5 225 52.4
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 6.8e-58 230.3 231 55.8
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.7e-54 218.4 258 53.9
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 9.9e-41 173.3 138 63.8
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.4e-34 152.1 250 43.6
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 2.6e-33 148.7 108 69.4
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 2.3e-21 109.0 64 78.1
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.8e-18 99.4 67 76.1
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 5.3e-18 97.8 68 73.5
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 7.6e-17 94.0 116 46.6
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 6.0e-14 84.3 77 59.7
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.1e-12 80.1 51 80.4
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.6e-11 76.3 70 50.0
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.8e-10 72.8 330 23.0
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.0e-09 69.3 135 34.8
CAN.G691.3 Capsicum annuum HOM05D005365 ORTHO05D115466 5.9e-09 67.8 68 67.6
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 5.9e-09 67.8 45 75.6
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 9.4e-07 60.5 47 59.6
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.6e-06 59.7 59 52.5
SEGI_22187 Sequoiadendron giganteum HOM05D005365 ORTHO05D000227 3.6e-06 58.5 44 59.1
Cre08.g362500 Chlamydomonas reinhardtii HOM05D005365 ORTHO05D006910 6.1e-06 57.8 474 23.0


User provided reference genes

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