Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.6e-45 184.9 86 100.0
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 8.0e-34 146.7 85 80.0
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.4e-25 119.4 87 66.7
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.2e-24 116.3 77 72.7
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.5e-24 113.6 82 65.9
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.8e-22 109.0 82 63.4
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.2e-21 106.3 83 56.6
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 3.5e-21 104.8 83 55.4
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 1.6e-18 95.9 69 63.8
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.1e-18 95.5 58 67.2
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 3.6e-18 94.7 61 60.7
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.0e-17 93.2 78 56.4
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.4e-17 92.8 64 60.9
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 1.8e-17 92.4 78 53.8
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 6.8e-17 90.5 78 52.6
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 6.8e-17 90.5 78 53.8
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 8.8e-17 90.1 82 51.2
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 8.8e-17 90.1 74 51.4
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.2e-16 89.7 68 57.4
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.2e-16 89.7 86 50.0
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 1.5e-16 89.4 61 59.0
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.0e-16 89.0 87 51.7
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 2.0e-16 89.0 87 51.7
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.0e-16 89.0 70 55.7
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.0e-16 89.0 78 53.8
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 3.4e-16 88.2 76 55.3
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 3.4e-16 88.2 70 55.7
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 4.4e-16 87.8 74 52.7
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 5.7e-16 87.4 74 55.4
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 5.7e-16 87.4 86 51.2
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 5.7e-16 87.4 97 47.4
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 7.5e-16 87.0 79 48.1
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 7.5e-16 87.0 90 50.0
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 7.5e-16 87.0 76 52.6
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 7.5e-16 87.0 78 48.7
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.7e-15 85.9 49 69.4
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 2.2e-15 85.5 73 50.7
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 2.2e-15 85.5 97 45.4
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.8e-15 85.1 84 48.8
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 2.8e-15 85.1 79 51.9
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 3.7e-15 84.7 46 65.2
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 4.8e-15 84.3 59 57.6
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 6.3e-15 84.0 60 56.7
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 6.3e-15 84.0 84 51.2
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 6.3e-15 84.0 59 62.7
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 8.3e-15 83.6 87 52.9
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 8.3e-15 83.6 87 52.9
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.1e-14 83.2 76 53.9
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.4e-14 82.8 53 62.3
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.4e-14 82.8 91 50.5
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 1.4e-14 82.8 73 50.7
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.8e-14 82.4 85 54.1
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.8e-14 82.4 59 57.6
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.8e-14 82.4 50 68.0
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 2.4e-14 82.0 56 58.9
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 3.1e-14 81.6 56 57.1
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 3.1e-14 81.6 45 68.9
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 3.1e-14 81.6 67 56.7
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 4.1e-14 81.3 80 46.2
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 4.1e-14 81.3 52 61.5
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 5.4e-14 80.9 64 57.8
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 5.4e-14 80.9 87 49.4
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 5.4e-14 80.9 73 50.7
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 7.0e-14 80.5 88 46.6
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 9.1e-14 80.1 47 63.8
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 9.1e-14 80.1 47 63.8
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 9.1e-14 80.1 47 63.8
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 9.1e-14 80.1 47 63.8
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 9.1e-14 80.1 47 63.8
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 9.1e-14 80.1 63 55.6
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 9.1e-14 80.1 49 63.3
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 9.1e-14 80.1 51 60.8
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.2e-13 79.7 79 49.4
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 1.6e-13 79.3 70 50.0
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 1.6e-13 79.3 58 58.6
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.6e-13 79.3 76 46.1
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 2.0e-13 79.0 78 43.6
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 2.0e-13 79.0 63 58.7
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.0e-13 79.0 47 66.0
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 2.7e-13 78.6 47 61.7
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 4.5e-13 77.8 56 58.9
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 4.5e-13 77.8 63 50.8
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 4.5e-13 77.8 47 63.8
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 4.5e-13 77.8 55 58.2
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 7.7e-13 77.0 78 46.2
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 7.7e-13 77.0 53 54.7
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 1.3e-12 76.3 61 55.7
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.3e-12 76.3 74 48.6
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 1.7e-12 75.9 78 43.6
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 2.3e-12 75.5 48 60.4
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 2.3e-12 75.5 63 54.0
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 2.9e-12 75.1 47 59.6
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 3.8e-12 74.7 47 61.7
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 3.8e-12 74.7 47 61.7
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 3.8e-12 74.7 47 61.7
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 3.8e-12 74.7 47 61.7
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 5.0e-12 74.3 58 55.2
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 5.0e-12 74.3 82 42.7
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 6.6e-12 73.9 65 46.2
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 1.1e-11 73.2 45 62.2
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 1.1e-11 73.2 45 62.2
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.1e-11 73.2 47 61.7
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 1.5e-11 72.8 47 59.6
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.5e-11 72.8 58 44.8
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.9e-11 72.4 57 47.4
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.9e-11 72.4 47 59.6
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 2.5e-11 72.0 62 51.6
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.5e-11 72.0 52 48.1
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 2.5e-11 72.0 49 63.3
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 5.5e-11 70.9 52 57.7
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 7.2e-11 70.5 45 64.4
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 9.5e-11 70.1 60 55.0
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.2e-10 69.7 54 51.9
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 1.2e-10 69.7 68 44.1
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.6e-10 69.3 40 65.0
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 2.1e-10 68.9 63 49.2
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 4.7e-10 67.8 55 52.7
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 6.1e-10 67.4 83 39.8
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-09 65.9 77 40.3
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 1.8e-09 65.9 67 46.3
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 2.3e-09 65.5 66 43.9
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 5.2e-09 64.3 46 50.0
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 5.2e-09 64.3 40 60.0
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 6.8e-09 63.9 68 44.1
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 8.9e-09 63.5 58 46.6
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.0e-08 62.4 64 45.3
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 2.6e-08 62.0 64 42.2
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 3.4e-08 61.6 65 44.6
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 9.8e-08 60.1 51 49.0
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 9.8e-08 60.1 54 48.1
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 6.3e-07 57.4 54 48.1
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 8.3e-07 57.0 62 41.9
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 1.4e-06 56.2 52 50.0
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 2.4e-06 55.5 55 47.3
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 4.1e-06 54.7 36 63.9
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 5.4e-06 54.3 40 50.0
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 9.2e-06 53.5 45 51.1


User provided reference genes

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