Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.3e-84 316.2 150 100.0
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 5.2e-65 251.1 150 78.7
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.9e-65 250.4 150 79.3
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 7.5e-64 247.3 150 77.3
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.9e-63 245.4 150 78.0
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.3e-60 236.5 150 76.0
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 8.6e-60 233.8 150 72.7
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 5.6e-59 231.1 150 70.7
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 9.5e-59 230.3 150 72.7
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.1e-58 229.2 150 72.7
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.1e-58 229.2 150 72.7
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.8e-58 228.8 150 72.7
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 4.7e-58 228.0 151 72.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 4.7e-58 228.0 150 70.0
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.4e-57 226.5 150 72.0
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.4e-57 225.7 150 68.7
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.1e-57 225.3 149 73.8
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.8e-57 224.2 151 69.5
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 8.9e-57 223.8 151 69.5
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 8.9e-57 223.8 150 71.3
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.2e-56 223.4 151 70.9
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.5e-56 223.0 151 70.2
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.5e-56 223.0 139 77.0
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.0e-56 222.6 144 73.6
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 5.8e-56 221.1 150 69.3
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 5.8e-56 221.1 139 74.8
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 9.9e-56 220.3 136 75.7
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 9.9e-56 220.3 146 71.2
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 9.9e-56 220.3 150 70.0
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.3e-55 219.9 147 69.4
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.3e-55 219.9 151 68.9
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.7e-55 219.5 131 77.9
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 3.8e-55 218.4 150 69.3
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 6.4e-55 217.6 151 68.9
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 6.4e-55 217.6 147 70.7
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 8.4e-55 217.2 136 73.5
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 1.1e-54 216.9 150 66.0
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.1e-54 216.9 132 77.3
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.4e-54 216.5 148 70.9
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.9e-54 216.1 145 69.7
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.9e-54 216.1 139 74.1
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 4.1e-54 214.9 145 70.3
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 4.1e-54 214.9 141 70.2
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 7.1e-54 214.2 148 65.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 7.1e-54 214.2 145 71.0
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 7.1e-54 214.2 139 73.4
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 7.1e-54 214.2 142 69.7
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 9.2e-54 213.8 139 73.4
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 9.2e-54 213.8 149 67.8
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 9.2e-54 213.8 145 71.0
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.2e-53 213.4 150 68.0
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.6e-53 213.0 145 69.7
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.6e-53 213.0 132 72.7
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.6e-53 213.0 132 75.0
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.1e-53 212.6 139 73.4
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.7e-53 212.2 139 72.7
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.7e-53 212.2 181 60.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 6.0e-53 211.1 145 69.0
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 6.0e-53 211.1 149 66.4
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 7.8e-53 210.7 132 75.0
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.0e-52 210.3 150 65.3
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.7e-52 209.5 156 66.0
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.7e-52 209.5 123 82.1
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.3e-52 209.1 157 66.2
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 3.0e-52 208.8 147 68.0
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 5.1e-52 208.0 141 68.1
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 8.6e-52 207.2 132 71.2
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 8.6e-52 207.2 130 74.6
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.5e-51 206.5 141 68.1
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.5e-51 206.5 147 64.6
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.5e-51 205.7 150 64.7
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 3.3e-51 205.3 143 67.1
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 3.3e-51 205.3 144 68.1
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 5.6e-51 204.5 145 66.9
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 5.6e-51 204.5 147 65.3
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 7.3e-51 204.1 143 65.7
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 7.3e-51 204.1 132 72.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 9.6e-51 203.8 145 66.9
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.2e-50 203.4 143 65.7
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.6e-50 203.0 144 66.7
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.6e-50 203.0 143 67.1
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.6e-50 203.0 147 65.3
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.6e-50 203.0 143 68.5
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.1e-50 202.6 132 71.2
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.1e-50 202.6 131 71.8
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 2.8e-50 202.2 132 73.5
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.8e-50 202.2 199 54.3
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.6e-50 201.8 143 67.1
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.6e-50 201.8 143 66.4
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 6.2e-50 201.1 131 71.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 6.2e-50 201.1 141 68.1
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 6.2e-50 201.1 131 71.0
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 8.1e-50 200.7 151 64.2
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 8.1e-50 200.7 131 71.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.4e-49 199.9 186 55.4
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.4e-49 199.9 143 65.0
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.8e-49 199.5 141 68.8
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.1e-49 198.7 151 64.9
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 4.0e-49 198.4 148 65.5
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 5.2e-49 198.0 130 70.0
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.9e-49 197.6 177 58.2
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 6.9e-49 197.6 131 69.5
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 9.0e-49 197.2 132 70.5
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.2e-48 196.8 163 59.5
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.0e-48 196.1 145 63.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 2.6e-48 195.7 132 68.2
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.6e-48 195.7 140 62.9
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 3.4e-48 195.3 160 61.2
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 9.9e-48 193.7 146 65.8
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 2.2e-47 192.6 154 63.0
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 4.9e-47 191.4 131 66.4
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 4.9e-47 191.4 147 63.9
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 6.4e-47 191.0 214 49.1
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.4e-46 189.9 131 67.9
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 4.6e-45 184.9 130 66.9
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 7.8e-45 184.1 116 71.6
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.7e-44 183.0 136 64.0
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.3e-44 182.6 120 72.5
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 3.0e-44 182.2 237 44.3
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.9e-43 179.5 113 73.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 4.8e-42 174.9 130 65.4
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 4.0e-41 171.8 129 66.7
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 7.6e-40 167.5 119 63.9
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.0e-36 157.1 94 80.9
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 8.1e-34 147.5 124 54.8
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.4e-33 146.7 126 51.6
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.3e-33 144.8 85 77.6
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 2.9e-31 139.0 125 52.8
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.1e-30 137.1 88 67.0
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 6.0e-29 131.3 98 63.3
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 7.9e-29 131.0 140 54.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.1e-25 119.0 88 63.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 2.0e-24 116.3 73 68.5
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 4.5e-24 115.2 81 61.7
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 7.6e-24 114.4 118 49.2
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 6.5e-23 111.3 73 68.5
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.5e-19 100.1 115 40.9
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 3.3e-19 99.0 67 64.2
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 7.4e-19 97.8 60 70.0
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.8e-17 93.2 59 72.9
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.1e-17 92.4 133 36.8
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.3e-10 70.5 57 64.9
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 4.1e-09 65.5 35 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 5.0e-07 58.5 52 48.1


User provided reference genes

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