Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-79 299.7 150 100.0
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.6e-64 248.8 133 95.5
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.6e-64 248.8 133 95.5
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.7e-63 246.1 133 94.7
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-62 243.4 133 94.0
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-62 243.4 133 94.0
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.4e-62 243.0 133 94.0
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 2.4e-62 242.3 133 93.2
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-59 233.4 133 90.2
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 5.6e-59 231.1 132 88.6
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 6.2e-58 227.6 133 88.0
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 8.9e-57 223.8 129 85.3
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 8.9e-57 223.8 133 85.7
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.9e-56 220.3 121 91.7
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 3.8e-55 218.4 129 84.5
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 3.8e-55 218.4 129 84.5
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 8.4e-55 217.2 129 84.5
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 8.4e-55 217.2 129 84.5
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 2.5e-51 205.7 133 81.2
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 2.5e-51 205.7 133 81.2
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 5.6e-51 204.5 119 86.6
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.1e-49 200.3 123 83.7
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.1e-49 198.7 130 78.5
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.1e-49 198.7 130 78.5
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 3.1e-49 198.7 133 78.2
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 4.0e-49 198.4 123 82.9
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 9.0e-49 197.2 123 82.1
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.6e-48 195.7 130 77.7
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 3.4e-48 195.3 133 77.4
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 4.4e-48 194.9 123 81.3
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 4.4e-48 194.9 123 81.3
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 4.4e-48 194.9 123 81.3
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 5.8e-48 194.5 129 78.3
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 7.6e-48 194.1 130 76.9
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 2.2e-47 192.6 123 81.3
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 2.9e-47 192.2 123 80.5
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 4.9e-47 191.4 119 83.2
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 4.9e-47 191.4 115 81.7
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 4.9e-47 191.4 115 81.7
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 4.9e-47 191.4 133 77.4
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 4.9e-47 191.4 123 80.5
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 8.4e-47 190.7 129 77.5
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 1.9e-46 189.5 119 82.4
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.9e-46 189.5 119 82.4
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.9e-46 189.5 119 82.4
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 1.9e-46 189.5 119 82.4
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 1.9e-46 189.5 119 82.4
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 3.2e-46 188.7 129 76.7
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 2.7e-45 185.7 190 58.4
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 7.8e-45 184.1 126 78.6
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 7.8e-45 184.1 126 78.6
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 1.0e-44 183.7 119 79.0
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 1.0e-44 183.7 123 78.9
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 5.1e-44 181.4 121 77.7
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 5.1e-44 181.4 123 78.0
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 5.1e-44 181.4 123 78.0
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.5e-43 179.9 116 79.3
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 1.9e-43 179.5 140 68.6
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 4.3e-43 178.3 123 77.2
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.8e-39 165.2 121 73.6
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 3.8e-39 165.2 89 93.3
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 6.4e-39 164.5 105 78.1
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.1e-38 163.7 98 83.7
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 1.3e-36 156.8 112 71.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.8e-36 156.4 91 85.7
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 1.8e-36 156.4 91 85.7
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 1.8e-36 156.4 114 71.1
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.1e-36 154.8 101 78.2
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 8.7e-36 154.1 92 83.7
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 7.4e-35 151.0 84 90.5
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.3e-34 150.2 101 77.2
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.1e-34 149.4 79 94.9
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 3.7e-34 148.7 87 86.2
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.2e-34 147.9 84 89.3
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.2e-34 147.9 84 89.3
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.4e-33 146.7 104 74.0
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.4e-33 146.7 91 81.3
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 1.9e-30 136.3 88 77.3
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 1.3e-26 123.6 77 80.5
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 2.2e-23 112.8 81 74.1
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.5e-23 111.3 83 73.5
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 1.3e-20 103.6 68 77.9
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 1.3e-20 103.6 68 77.9
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-20 103.6 60 88.3
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 3.3e-19 99.0 73 69.9
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 3.3e-19 99.0 76 68.4
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 5.7e-19 98.2 58 82.8
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.8e-18 95.9 68 70.6
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 4.8e-18 95.1 65 72.3
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.0e-15 87.4 58 74.1
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 2.9e-15 85.9 56 80.4
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 1.1e-14 84.0 47 87.2
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 1.0e-12 77.4 49 77.6
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.3e-12 76.3 58 70.7
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.8e-09 66.6 41 73.2
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 4.1e-09 65.5 39 79.5
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 2.5e-06 56.2 49 57.1


User provided reference genes

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