Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.5e-138 494.6 247 100.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.3e-126 455.7 248 92.3
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.1e-101 373.6 241 78.4
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.7e-100 369.8 246 75.6
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 2.4e-99 365.9 246 74.8
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.1e-99 365.5 246 74.4
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.0e-98 362.8 242 74.8
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.0e-94 350.5 244 75.4
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 5.2e-94 348.2 246 72.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.2e-92 342.8 217 77.4
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 2.8e-92 342.4 245 72.7
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 1.1e-91 340.5 243 71.6
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 7.0e-91 337.8 243 71.2
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 5.0e-89 331.6 244 69.7
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 9.4e-88 327.4 252 71.0
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.6e-87 326.6 246 69.5
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 3.6e-87 325.5 244 68.4
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.7e-87 325.1 250 69.6
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 8.8e-86 320.9 257 66.1
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.2e-85 320.5 247 66.4
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 3.7e-84 315.5 256 67.6
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 4.9e-84 315.1 251 67.3
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.1e-83 313.9 247 65.6
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.1e-83 313.9 250 67.6
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 3.1e-83 312.4 271 62.0
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 3.1e-83 312.4 248 66.1
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 7.7e-82 307.8 216 72.7
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.3e-81 306.2 254 64.2
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 5.0e-81 305.1 247 68.4
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.6e-79 300.1 236 66.5
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 3.6e-79 298.9 247 64.0
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 3.6e-79 298.9 252 64.3
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.8e-78 296.6 273 62.6
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 5.2e-78 295.0 249 63.9
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 2.0e-77 293.1 249 64.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 2.6e-77 292.7 251 63.3
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 2.6e-77 292.7 213 70.9
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 4.4e-77 292.0 255 61.6
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.7e-77 291.6 249 63.5
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 5.7e-77 291.6 243 65.0
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.7e-76 290.0 233 65.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.7e-76 290.0 262 58.4
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.2e-76 289.7 249 63.1
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.2e-76 289.7 251 62.9
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.7e-76 288.9 249 63.1
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.9e-76 288.5 240 63.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.1e-75 287.3 240 63.8
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.8e-75 286.6 240 63.8
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.4e-75 285.0 266 60.2
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 7.0e-75 284.6 261 61.7
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.2e-74 283.9 241 61.8
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.6e-74 283.5 250 60.0
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.0e-74 283.1 240 62.9
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.7e-74 282.7 268 59.0
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 3.5e-74 282.3 249 63.1
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.5e-74 282.3 252 62.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 4.6e-74 282.0 255 59.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.0e-73 280.8 196 73.0
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.0e-73 280.8 249 61.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.6e-73 278.1 237 63.7
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.5e-72 276.9 275 53.8
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.9e-72 276.6 248 61.3
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.3e-72 275.8 242 61.6
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 3.3e-72 275.8 266 54.9
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 5.6e-72 275.0 268 56.3
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.6e-71 273.5 261 59.8
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.8e-71 272.7 227 61.7
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 2.3e-70 269.6 255 56.5
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 6.8e-70 268.1 210 65.2
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 5.8e-69 265.0 283 56.9
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-68 263.8 243 58.8
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.7e-68 263.5 253 57.3
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.9e-68 262.7 253 57.3
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 8.3e-68 261.2 250 57.2
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 8.3e-68 261.2 220 65.0
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.4e-67 260.4 302 51.0
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.4e-67 259.6 242 59.5
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.4e-67 259.6 243 60.1
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 9.2e-67 257.7 259 54.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.2e-66 257.3 206 66.0
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.2e-66 257.3 247 57.9
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.2e-66 257.3 247 57.9
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.0e-65 254.2 252 57.1
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.3e-65 253.8 179 72.1
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.3e-65 253.1 254 57.9
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 8.6e-65 251.1 249 56.6
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 8.6e-65 251.1 177 71.8
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 4.3e-64 248.8 224 59.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 9.5e-64 247.7 229 59.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 9.5e-64 247.7 253 56.5
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 9.5e-64 247.7 254 57.9
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 9.5e-64 247.7 250 55.6
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.2e-63 247.3 243 57.2
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 2.8e-63 246.1 206 64.1
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.8e-63 246.1 205 64.9
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 4.7e-63 245.4 206 60.7
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 6.2e-63 245.0 257 55.6
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.1e-62 244.2 237 56.5
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-62 243.8 257 55.3
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 3.1e-62 242.7 257 55.3
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 3.1e-62 242.7 257 55.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.0e-62 242.3 194 63.4
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 5.2e-62 241.9 226 58.8
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 2.0e-61 240.0 230 57.0
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 9.8e-61 237.7 177 68.9
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 4.9e-60 235.3 246 54.5
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 3.2e-59 232.6 224 59.4
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.2e-58 230.7 263 52.1
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.1e-58 229.9 244 52.5
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.9e-57 225.7 251 54.6
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.5e-56 223.8 177 68.4
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 2.8e-55 219.5 178 60.7
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.8e-55 219.5 178 60.7
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 4.7e-55 218.8 255 52.2
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-53 213.4 250 49.6
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.0e-53 213.4 252 52.0
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 4.4e-53 212.2 237 51.9
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 5.8e-53 211.8 267 46.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.2e-52 209.9 254 49.2
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.1e-51 207.6 196 58.2
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-51 207.6 255 49.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.1e-51 207.6 256 50.4
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 2.7e-50 203.0 191 53.9
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 7.8e-50 201.4 258 49.2
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.3e-49 199.9 181 60.2
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 3.0e-49 199.5 195 56.9
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 5.1e-49 198.7 175 61.1
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 8.6e-49 198.0 170 57.6
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 4.3e-48 195.7 165 59.4
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.1e-47 191.4 201 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.5e-45 187.2 150 58.0
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 6.4e-44 181.8 256 45.7
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.2e-43 179.1 117 70.1
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.6e-42 177.2 137 71.5
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 2.7e-42 176.4 190 50.0
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 1.7e-41 173.7 195 49.2
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.6e-41 171.8 177 52.0
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.9e-40 170.2 139 69.1
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.8e-38 163.7 140 68.6
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 9.0e-38 161.4 160 56.9
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.4e-35 152.1 104 72.1
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.9e-33 146.0 139 64.7
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.6e-33 145.2 108 62.0
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.5e-32 143.3 132 63.6
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 4.3e-32 142.5 137 53.3
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 9.6e-32 141.4 174 44.8
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 2.8e-31 139.8 146 57.5
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 5.3e-30 135.6 131 59.5
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 2.0e-29 133.7 110 59.1
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 2.4e-27 126.7 164 50.6
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 7.9e-26 121.7 252 38.5
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.8e-25 120.6 249 40.2
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 8.1e-23 111.7 108 50.0
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.1e-22 111.3 149 51.0
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 2.4e-22 110.2 214 36.0
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 7.6e-21 105.1 97 63.9
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 6.5e-20 102.1 93 46.2
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 2.5e-19 100.1 118 39.0
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.5e-19 100.1 101 56.4
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 7.9e-18 95.1 141 49.6
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.9e-17 92.8 68 67.6
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 5.7e-16 89.0 89 55.1
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 3.1e-14 83.2 103 51.5
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 1.2e-13 81.3 119 40.3
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.5e-13 80.9 82 54.9
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.7e-12 77.4 69 53.6
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 6.5e-12 75.5 68 57.4
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 6.5e-12 75.5 53 60.4
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.0e-09 68.2 60 58.3
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.5e-08 63.5 50 54.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 2.8e-07 60.1 59 44.1
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-06 57.8 89 42.7
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 2.4e-06 57.0 89 41.6
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 4.1e-06 56.2 66 37.9
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 9.0e-06 55.1 34 64.7


User provided reference genes

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