Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.4e-175 618.2 313 100.0
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 4.3e-154 548.1 307 91.5
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 3.4e-151 538.5 308 89.6
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.3e-150 536.6 308 89.3
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 6.2e-145 517.7 333 82.3
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.3e-139 500.0 267 93.6
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 3.9e-123 445.3 275 82.9
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 4.4e-122 441.8 234 94.4
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 9.7e-122 440.7 267 83.9
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 7.0e-120 434.5 268 81.7
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 5.9e-119 431.4 257 82.5
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.9e-118 429.1 267 79.8
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 3.8e-118 428.7 286 75.9
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 5.0e-118 428.3 264 81.8
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.1e-117 427.2 295 74.9
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 5.5e-117 424.9 301 73.1
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 5.5e-117 424.9 275 77.5
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.6e-116 423.3 309 71.2
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 2.7e-116 422.5 302 71.5
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 8.0e-116 421.0 281 77.2
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.1e-114 417.2 276 77.5
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.1e-114 417.2 276 77.5
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 3.3e-114 415.6 271 76.8
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 3.3e-114 415.6 261 78.9
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.3e-113 413.7 280 74.3
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 4.8e-113 411.8 291 73.5
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 6.3e-113 411.4 271 74.9
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 8.2e-113 411.0 261 78.2
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 8.2e-113 411.0 284 75.0
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 8.2e-113 411.0 288 72.6
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.4e-112 410.2 288 72.6
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.4e-112 410.2 269 77.0
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 3.1e-112 409.1 294 72.4
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 4.1e-112 408.7 298 71.5
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 7.0e-112 407.9 304 71.1
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 9.1e-112 407.5 283 73.1
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 9.1e-112 407.5 275 75.3
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.2e-111 407.1 291 73.2
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.6e-111 406.8 289 72.0
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 2.0e-111 406.4 280 74.3
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.5e-111 405.6 269 75.8
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 3.5e-111 405.6 290 71.7
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 7.7e-111 404.4 275 73.8
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.3e-110 403.7 275 76.0
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.3e-110 403.7 294 70.7
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.7e-110 403.3 275 73.1
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 1.7e-110 403.3 271 74.2
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 3.8e-110 402.1 263 75.3
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 3.8e-110 402.1 275 74.5
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 6.5e-110 401.4 291 71.8
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.1e-109 400.6 266 76.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.5e-109 400.2 263 75.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 5.5e-109 398.3 274 74.1
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 5.5e-109 398.3 284 71.8
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 7.2e-109 397.9 281 71.5
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 9.4e-109 397.5 312 66.7
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 9.4e-109 397.5 291 71.8
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.1e-108 396.4 294 71.8
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.0e-107 394.0 312 66.0
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.4e-107 393.7 278 71.9
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.8e-107 393.3 292 67.8
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.3e-107 392.9 299 70.9
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.3e-107 392.9 299 70.9
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 2.3e-107 392.9 272 73.5
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.0e-107 392.1 231 83.5
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 4.0e-107 392.1 268 70.5
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 6.7e-107 391.3 267 71.9
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 8.8e-107 391.0 309 66.0
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 1.5e-106 390.2 332 62.0
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 4.4e-106 388.7 267 71.5
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 5.7e-106 388.3 231 84.0
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.7e-105 386.7 307 66.8
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.7e-105 386.7 343 62.4
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.7e-105 386.7 272 71.3
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 2.2e-105 386.3 268 70.5
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 2.8e-105 386.0 272 71.3
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 3.7e-105 385.6 302 66.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.7e-105 385.6 321 66.4
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 3.7e-105 385.6 274 71.9
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 6.3e-105 384.8 269 73.2
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 8.2e-105 384.4 265 71.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-104 382.9 240 78.3
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 5.3e-104 381.7 289 69.9
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 7.0e-104 381.3 298 67.4
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 9.1e-104 380.9 272 70.6
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 3.5e-103 379.0 270 69.3
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 3.5e-103 379.0 270 69.3
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 7.7e-103 377.9 271 69.0
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.3e-102 377.1 269 71.4
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 6.5e-102 374.8 321 62.9
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.1e-101 374.0 235 77.9
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.6e-98 362.8 265 68.3
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 4.4e-98 362.1 395 53.4
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.2e-92 344.0 262 66.0
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 4.7e-92 342.0 298 64.1
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.2e-90 337.4 251 64.5
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 9.8e-90 334.3 270 63.3
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.9e-89 332.0 194 82.5
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.4e-88 328.6 251 66.5
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-86 322.4 234 70.5
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 6.6e-86 321.6 254 63.8
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 8.6e-86 321.2 250 63.2
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 4.3e-77 292.4 197 68.5
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.1e-76 290.0 227 70.5
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 3.2e-72 276.2 213 70.0
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 3.2e-72 276.2 196 71.9
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 6.2e-68 261.9 203 65.5
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 2.6e-66 256.5 203 66.5
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 7.1e-64 248.4 177 71.8
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 3.9e-62 242.7 157 75.2
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 7.3e-61 238.4 178 68.5
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.6e-60 237.3 180 70.6
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.5e-58 230.7 195 60.0
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.1e-56 224.6 130 85.4
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 6.6e-54 215.3 171 66.1
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 7.3e-53 211.8 171 64.9
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 6.4e-49 198.7 228 50.4
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 6.0e-47 192.2 122 74.6
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-46 189.9 161 63.4
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-44 184.5 160 62.5
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-44 184.1 157 63.1
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 8.1e-44 181.8 173 58.4
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 8.1e-44 181.8 157 62.4
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-43 179.5 157 63.1
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-42 177.9 157 61.1
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-41 173.7 222 49.1
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 8.4e-41 171.8 167 56.3
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 4.6e-39 166.0 108 76.9
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-38 163.3 149 59.7
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.9e-37 160.6 104 74.0
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-36 156.4 157 57.3
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.1e-35 154.8 105 71.4
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.4e-35 154.5 307 37.1
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-33 147.1 125 62.4
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-33 146.0 142 57.7
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-32 142.5 159 53.5
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-32 142.5 159 53.5
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 7.1e-32 142.1 94 76.6
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 7.1e-32 142.1 177 50.8
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-31 141.0 107 68.2
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.1e-29 134.8 88 72.7
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.0e-26 124.0 81 75.3
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-26 123.2 153 49.7
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-25 120.6 109 59.6
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-21 105.1 133 46.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-21 105.1 70 75.7
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 5.0e-17 92.8 101 51.5
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.5e-17 92.0 57 73.7
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.1e-16 91.7 64 67.2
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-16 90.9 89 57.3
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 7.2e-08 62.4 111 36.0
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.6e-07 61.2 36 80.6
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 7.9e-07 58.9 66 48.5
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 2.3e-06 57.4 36 72.2
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 5.1e-06 56.2 34 73.5
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 8.8e-06 55.5 35 71.4


User provided reference genes

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