Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 0.0e+00 2049.6 1049 100.0
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 0.0e+00 1781.5 987 92.4
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 0.0e+00 1673.3 1054 82.5
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 0.0e+00 1543.9 911 86.3
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 0.0e+00 1500.7 881 86.3
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1106.7 941 60.3
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 0.0e+00 1097.4 731 79.2
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 0.0e+00 1095.1 1052 54.2
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 1.9e-302 1042.7 1049 54.0
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 8.7e-300 1033.9 969 56.1
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 1.1e-299 1033.5 976 55.5
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 2.8e-298 1028.9 1076 52.4
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 1.4e-297 1026.5 1061 52.4
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 1.5e-296 1023.1 1065 53.0
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.3e-292 1010.0 1064 51.8
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 2.5e-291 1005.7 1067 50.8
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 3.7e-290 1001.9 1064 51.6
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 8.1e-290 1000.7 883 58.3
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 4.2e-286 988.4 1053 51.2
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 4.2e-286 988.4 1068 51.0
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 1.8e-284 983.0 1054 51.2
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 8.7e-284 980.7 967 53.9
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 1.6e-282 976.5 1050 50.3
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 1.3e-276 956.8 1056 49.1
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 1.9e-275 953.0 1058 48.9
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 2.5e-275 952.6 938 53.5
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 3.7e-274 948.7 972 51.3
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 1.8e-273 946.4 1045 49.0
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 1.2e-272 943.7 1050 48.2
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 2.0e-272 943.0 1059 48.1
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 3.4e-272 942.2 1059 48.2
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 1.4e-270 936.8 949 51.7
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 1.6e-269 933.3 1050 48.4
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 4.6e-269 931.8 904 53.5
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 1.8e-268 929.9 1046 48.8
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 8.8e-268 927.5 1094 47.5
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 4.8e-266 921.8 1054 48.1
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 8.2e-266 921.0 833 57.5
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 4.5e-264 915.2 1052 48.5
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.1e-262 910.6 1054 47.5
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 1.1e-262 910.6 773 60.2
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 7.2e-262 907.9 942 49.8
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 1.2e-261 907.1 1050 47.3
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.6e-261 906.7 1054 47.3
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.4e-259 898.7 1053 47.0
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 1.2e-256 890.6 1060 46.0
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 2.7e-253 879.4 965 50.2
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 1.7e-250 870.2 968 47.4
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 3.1e-249 865.9 969 47.3
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 5.0e-247 858.6 1056 44.6
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 8.5e-247 857.8 1058 45.7
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.2e-245 854.0 1047 44.4
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 2.7e-245 852.8 963 48.8
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 5.2e-244 848.6 907 49.9
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 9.8e-243 844.3 933 48.7
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 2.2e-242 843.2 1048 43.5
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 4.5e-240 835.5 1056 44.6
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 8.5e-239 831.2 1056 45.0
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 1.9e-238 830.1 1051 44.6
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 1.5e-235 820.5 956 45.7
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 5.0e-231 805.4 1049 43.3
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 6.6e-231 805.1 891 48.6
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 1.9e-230 803.5 980 44.0
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 2.5e-230 803.1 937 47.4
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 3.6e-229 799.3 903 46.1
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.2e-227 794.3 980 43.8
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 3.4e-227 792.7 895 47.5
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 7.5e-227 791.6 904 46.3
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 6.4e-226 788.5 913 45.9
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 3.9e-223 779.2 1036 42.5
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.1e-222 777.7 1045 42.3
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 1.9e-222 776.9 1049 42.4
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 1.6e-221 773.9 919 45.6
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 2.8e-221 773.1 1043 42.7
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 8.0e-221 771.5 1048 42.1
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.1e-220 771.2 1043 42.2
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 1.8e-220 770.4 1043 42.2
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 2.0e-219 766.9 980 43.3
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 4.4e-219 765.8 1047 42.0
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 3.7e-218 762.7 1045 42.3
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 3.7e-218 762.7 1032 44.1
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 2.4e-217 760.0 1073 40.2
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 6.0e-216 755.4 1045 41.4
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 5.0e-215 752.3 934 43.4
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 6.6e-215 751.9 1103 41.9
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 2.5e-214 750.0 973 43.1
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 2.3e-212 743.4 1059 40.6
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 1.7e-210 737.3 925 43.7
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 3.5e-208 729.6 1039 40.7
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 1.6e-200 704.1 963 40.5
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 2.7e-192 676.8 902 41.5
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 8.4e-186 655.2 941 43.7
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 4.2e-185 652.9 658 51.1
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 5.4e-185 652.5 831 42.7
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 6.0e-176 622.5 814 41.8
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 6.7e-175 619.0 1069 36.5
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 2.7e-168 597.0 746 44.4
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 1.1e-164 585.1 1088 35.5
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 9.1e-156 555.4 890 38.1
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 9.4e-145 518.8 923 35.6
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 3.7e-117 427.2 556 42.3
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 6.7e-66 256.9 1027 24.1
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.1e-63 249.6 659 29.7
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 4.5e-54 217.6 318 40.6
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 2.9e-53 214.9 763 25.6
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 9.3e-52 209.9 270 43.0
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 2.4e-39 168.7 447 28.6
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 1.5e-38 166.0 232 44.4
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 7.9e-35 153.7 203 47.3
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 6.1e-27 127.5 422 25.4
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.5e-25 122.9 718 21.6
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 1.6e-22 112.8 136 45.6
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 2.2e-21 109.0 106 55.7
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 2.7e-14 85.5 117 38.5
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 2.8e-08 65.5 138 29.0
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 9.1e-07 60.5 73 43.8
PGSC0003DMG400029639 Solanum tuberosum HOM05D006492 ORTHO05D035178 7.7e-06 57.4 35 88.6


User provided reference genes

Program Settings