Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 4.0e-60 234.6 118 100.0
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 3.8e-34 148.3 75 97.3
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 7.9e-16 87.4 45 93.3
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 1.1e-14 83.6 45 91.1
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 1.5e-14 83.2 45 86.7
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 1.6e-13 79.7 49 83.7
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 3.7e-13 78.6 73 58.9
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.8e-12 76.3 49 75.5
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 9.0e-12 73.9 40 90.0
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 5.8e-11 71.2 52 61.5
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 7.6e-11 70.9 45 66.7
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.3e-10 70.1 45 73.3
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.3e-10 70.1 36 88.9
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 2.2e-10 69.3 45 75.6
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 3.8e-10 68.6 41 80.5
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 4.9e-10 68.2 36 86.1
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 8.4e-10 67.4 46 69.6
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.4e-09 66.6 40 80.0
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 1.2e-08 63.5 47 63.8
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 1.2e-08 63.5 41 65.9
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 3.5e-08 62.0 39 71.8
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 6.0e-08 61.2 36 75.0
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 6.0e-08 61.2 36 75.0
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 6.0e-08 61.2 36 75.0
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 7.9e-08 60.8 40 70.0
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 7.9e-08 60.8 38 78.9
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.0e-07 60.5 45 66.7
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.0e-07 60.5 45 57.8
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 1.0e-07 60.5 45 62.2
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 1.0e-07 60.5 40 67.5
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 1.3e-07 60.1 35 74.3
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.3e-07 60.1 40 72.5
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 1.3e-07 60.1 35 68.6
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.8e-07 59.7 40 72.5
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 2.3e-07 59.3 39 64.1
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 3.0e-07 58.9 40 62.5
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.9e-07 58.5 42 66.7
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.9e-07 58.5 40 70.0
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 3.9e-07 58.5 40 72.5
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 5.1e-07 58.2 45 62.2
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 5.1e-07 58.2 37 75.7
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.1e-07 58.2 37 75.7
Hund15797 Selenicereus undatus HOM05D007120 ORTHO05D008881 5.1e-07 58.2 43 58.1
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 8.7e-07 57.4 35 65.7
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.1e-06 57.0 35 74.3
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 1.5e-06 56.6 40 62.5
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 1.5e-06 56.6 48 56.2
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 1.5e-06 56.6 41 70.7
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 1.5e-06 56.6 40 62.5
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 1.5e-06 56.6 35 68.6
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 1.9e-06 56.2 40 72.5
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 3.3e-06 55.5 40 62.5
EL10Ac2g02666 Beta vulgaris HOM05D007120 ORTHO05D008881 3.3e-06 55.5 41 53.7
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 4.3e-06 55.1 41 58.5
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 5.6e-06 54.7 40 67.5
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.6e-06 54.7 40 65.0
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.6e-06 54.7 40 65.0
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 5.6e-06 54.7 40 65.0
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 5.6e-06 54.7 40 60.0
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 7.4e-06 54.3 33 75.8
HPP92_000774 Vanilla planifolia HOM05D007120 ORTHO05D008881 9.6e-06 53.9 43 65.1
HPP92_026799 Vanilla planifolia HOM05D007120 ORTHO05D008881 9.6e-06 53.9 43 65.1


User provided reference genes

Program Settings