Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.2e-150 536.6 280 100.0
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.6e-134 480.7 281 91.1
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.2e-86 323.9 296 60.1
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 5.2e-74 282.0 245 62.9
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 5.9e-70 268.5 304 52.6
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 1.1e-68 264.2 301 52.2
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 9.4e-68 261.2 317 51.7
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.6e-67 260.4 316 50.9
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 4.7e-67 258.8 304 52.3
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 4.7e-67 258.8 314 50.6
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.4e-66 257.3 301 50.5
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 2.3e-66 256.5 298 50.7
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 4.0e-66 255.8 308 52.6
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 4.0e-66 255.8 314 50.3
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 6.8e-66 255.0 305 49.5
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 3.4e-65 252.7 299 53.2
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 5.7e-65 251.9 304 49.0
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 9.8e-65 251.1 302 50.3
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 3.7e-64 249.2 311 49.5
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 6.3e-64 248.4 311 49.2
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 1.8e-63 246.9 299 51.2
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 9.1e-63 244.6 310 48.4
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.7e-61 240.4 309 49.2
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 6.5e-61 238.4 309 47.2
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.5e-60 237.3 308 47.7
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 9.4e-60 234.6 304 48.0
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.2e-59 234.2 297 45.8
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.2e-59 234.2 299 48.5
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.0e-58 231.1 305 47.5
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.4e-58 230.7 318 47.5
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 6.8e-58 228.4 310 45.5
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 8.8e-58 228.0 308 47.1
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 8.8e-58 228.0 305 47.2
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 3.4e-57 226.1 371 41.5
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 1.3e-56 224.2 296 47.3
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 7.0e-55 218.4 327 45.9
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 9.1e-55 218.0 310 47.1
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 9.1e-55 218.0 344 43.9
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.2e-54 217.6 293 46.1
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 6.6e-53 211.8 271 49.1
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 6.6e-53 211.8 318 45.0
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.5e-52 210.7 305 44.3
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 2.5e-52 209.9 313 43.8
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.0e-50 204.5 293 46.1
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.3e-48 195.3 298 43.3
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 1.1e-47 194.5 291 40.2
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.2e-46 191.0 291 44.3
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.6e-46 190.7 300 44.7
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.6e-46 190.7 300 44.7
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 2.0e-46 190.3 270 43.0
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 3.5e-46 189.5 270 42.6
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 3.5e-46 189.5 270 42.6
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 4.6e-46 189.1 270 43.0
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.9e-46 188.7 278 41.7
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 5.9e-46 188.7 321 41.4
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 7.8e-46 188.3 273 42.9
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.3e-45 187.6 308 43.8
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.3e-45 186.8 270 42.2
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 2.9e-45 186.4 298 41.3
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.6e-45 185.3 289 43.9
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 8.6e-45 184.9 432 34.0
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-44 184.5 274 43.1
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.5e-44 184.1 277 43.0
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 5.6e-44 182.2 274 42.0
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 9.5e-44 181.4 274 42.0
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.1e-43 180.3 283 42.4
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 2.1e-43 180.3 278 42.1
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 2.1e-43 180.3 289 41.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.8e-43 179.9 312 41.3
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 2.8e-43 179.9 289 40.8
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 3.6e-43 179.5 284 41.9
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 3.6e-43 179.5 301 43.2
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 4.7e-43 179.1 300 41.7
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 6.1e-43 178.7 284 41.9
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 6.1e-43 178.7 294 39.8
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.0e-42 177.9 280 40.4
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-42 177.6 273 41.8
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.8e-42 177.2 285 39.6
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 6.8e-42 175.3 277 43.3
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 8.9e-42 174.9 277 43.0
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 2.0e-41 173.7 270 41.1
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 3.4e-41 172.9 270 41.1
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.4e-41 172.9 302 40.7
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 5.8e-41 172.2 278 41.4
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 1.7e-40 170.6 291 41.6
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.9e-40 169.9 282 40.4
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.9e-40 169.9 304 40.1
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 3.7e-40 169.5 284 41.2
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 3.7e-40 169.5 288 42.0
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 4.9e-40 169.1 292 41.8
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.1e-39 167.9 301 41.9
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 1.1e-39 167.9 288 41.3
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.1e-39 167.9 296 39.9
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.9e-39 167.2 142 59.9
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 3.2e-39 166.4 288 41.7
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.1e-39 166.0 300 41.3
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 4.1e-39 166.0 320 39.1
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 7.0e-39 165.2 271 39.5
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 7.0e-39 165.2 281 40.9
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.2e-38 164.5 300 41.0
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.7e-38 163.3 299 40.1
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 4.6e-38 162.5 285 38.6
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 4.6e-38 162.5 309 40.8
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 7.8e-38 161.8 296 37.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 7.8e-38 161.8 312 40.7
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 7.8e-38 161.8 299 40.8
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.3e-37 161.0 300 40.0
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 1.7e-37 160.6 292 40.8
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 8.6e-37 158.3 200 46.5
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 8.6e-37 158.3 303 38.3
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.5e-36 157.5 299 38.1
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.9e-36 157.1 312 38.1
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 5.6e-36 155.6 299 36.8
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 1.2e-35 154.5 302 36.8
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.8e-35 153.3 192 47.4
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 3.6e-35 152.9 301 38.5
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.1e-35 151.8 289 40.5
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 6.8e-34 148.7 305 39.0
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.9e-31 140.6 254 39.4
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 7.1e-31 138.7 303 35.6
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 9.2e-31 138.3 311 38.9
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.0e-29 134.8 284 37.7
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.3e-29 133.7 275 36.7
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 5.1e-29 132.5 236 39.8
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.1e-28 131.3 173 45.7
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 1.1e-28 131.3 172 49.4
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.9e-28 130.6 328 35.1
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.4e-26 124.4 301 33.6
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 6.8e-26 122.1 73 78.1
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.7e-24 116.3 254 37.4
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 4.9e-24 115.9 171 43.9
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.3e-21 107.1 354 28.2
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.3e-21 107.1 354 28.2
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 9.6e-20 101.7 211 37.9
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 5.2e-18 95.9 200 38.0
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.0e-13 80.1 116 41.4
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.0e-13 80.1 116 41.4
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.9e-13 79.7 48 79.2
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 4.3e-12 76.3 236 32.6
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 8.1e-11 72.0 218 29.8
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.4e-10 71.2 75 48.0
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 3.1e-10 70.1 40 82.5
EL10Ac8g20467 Beta vulgaris HOM05D003936 ORTHO05D004747 4.4e-09 66.2 154 37.0
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 9.9e-09 65.1 36 83.3
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 2.2e-08 63.9 116 30.2
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 4.9e-08 62.8 71 43.7
EL10Ac9g21844 Beta vulgaris HOM05D001651 ORTHO05D000277 9.3e-07 58.5 146 38.4
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.7e-06 57.0 57 43.9
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 4.6e-06 56.2 51 62.7
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 7.9e-06 55.5 42 59.5
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 7.9e-06 55.5 42 59.5
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 7.9e-06 55.5 42 59.5
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 7.9e-06 55.5 30 90.0


User provided reference genes

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