Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 6.9e-128 460.7 237 100.0
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.6e-105 386.3 210 94.8
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 6.7e-99 364.4 228 81.6
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 2.5e-98 362.5 228 81.6
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 4.3e-98 361.7 228 81.6
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 2.5e-93 345.9 231 76.6
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 3.6e-92 342.0 229 77.3
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 2.2e-73 279.6 238 60.5
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 2.4e-72 276.2 229 61.6
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 4.1e-72 275.4 229 61.6
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 5.3e-72 275.0 226 59.7
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 2.9e-70 269.2 229 61.1
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 6.5e-70 268.1 230 59.1
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 6.5e-70 268.1 221 62.9
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.1e-69 267.3 230 61.3
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 1.9e-69 266.5 236 60.6
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 3.2e-69 265.8 230 62.2
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 7.0e-64 248.1 220 58.6
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 1.2e-63 247.3 229 57.6
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 3.5e-63 245.7 219 57.1
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 7.7e-63 244.6 237 57.8
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 1.7e-62 243.4 226 54.9
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 5.0e-62 241.9 222 57.7
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 6.5e-62 241.5 228 56.1
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 8.5e-62 241.1 235 55.7
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 1.9e-61 240.0 238 53.4
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 1.2e-60 237.3 247 52.6
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 3.6e-60 235.7 228 53.9
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 3.6e-60 235.7 244 54.1
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 3.6e-60 235.7 211 56.4
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 4.7e-60 235.3 225 55.6
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 1.4e-59 233.8 228 54.8
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 4.0e-59 232.3 237 54.0
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 1.3e-57 227.3 226 54.4
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 2.8e-57 226.1 218 52.8
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 3.7e-57 225.7 230 54.8
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 6.3e-57 224.9 228 50.4
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 2.4e-56 223.0 228 52.6
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 2.0e-55 219.9 228 51.8
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 4.5e-55 218.8 228 51.8
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 1.0e-54 217.6 238 50.0
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 2.5e-53 213.0 257 45.5
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 7.2e-53 211.5 227 49.3
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 2.1e-52 209.9 230 50.0
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 2.8e-52 209.5 223 46.2
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 1.4e-51 207.2 252 50.4
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 3.0e-51 206.1 248 50.0
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 5.2e-51 205.3 236 49.2
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 1.5e-50 203.8 238 47.9
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 1.5e-50 203.8 223 45.7
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 2.6e-50 203.0 229 48.0
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 3.4e-50 202.6 236 47.9
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 5.7e-50 201.8 245 47.3
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 5.7e-50 201.8 238 48.7
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 7.5e-50 201.4 238 47.5
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 1.7e-49 200.3 238 47.1
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 1.7e-49 200.3 245 47.3
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 1.7e-49 200.3 240 45.8
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 6.3e-49 198.4 235 46.8
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 6.3e-49 198.4 222 47.3
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 1.1e-48 197.6 236 48.3
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 1.4e-48 197.2 235 46.4
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 1.4e-48 197.2 236 47.5
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 1.8e-48 196.8 228 46.1
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 9.2e-48 194.5 234 46.6
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 9.2e-48 194.5 234 46.6
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 2.3e-46 189.9 221 48.4
PGR031G3062 Punica granatum HOM05D006860 ORTHO05D009547 1.1e-45 187.6 221 49.8
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 1.1e-45 187.6 226 46.9
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 1.9e-45 186.8 214 45.3
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 1.6e-44 183.7 225 49.3
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 1.6e-44 183.7 215 50.2
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 6.1e-44 181.8 243 42.8
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 3.1e-43 179.5 229 43.7
Actinidia27452 Actinidia chinensis HOM05D006860 ORTHO05D009547 1.5e-42 177.2 172 52.3
Ah.12g056480 Amaranthus hybridus HOM05D006860 ORTHO05D009547 2.2e-41 173.3 198 49.0
HPP92_025643 Vanilla planifolia HOM05D006860 ORTHO05D009547 1.2e-39 167.5 203 47.3
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 6.6e-38 161.8 213 43.7
TPR.G24674 Trifolium pratense HOM05D006860 ORTHO05D009547 4.7e-36 155.6 206 41.3
Sc07g0009390 Simmondsia chinensis HOM05D000685 ORTHO05D000511 1.0e-30 137.9 193 47.2
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 2.8e-28 129.8 116 56.0
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 5.4e-24 115.5 132 48.5
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 1.6e-23 114.0 224 35.3
Ciclev10023898m.g Citrus clementina HOM05D006860 ORTHO05D009547 3.5e-23 112.8 123 48.0
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 1.9e-21 107.1 204 35.3
Sp7g20630 Schrenkiella parvula HOM05D006860 ORTHO05D015488 2.1e-20 103.6 202 33.2
Carub.0008s2329 Capsella rubella HOM05D006860 ORTHO05D009547 2.6e-18 96.7 227 30.8
C07p51900 Brassica napus HOM05D006860 ORTHO05D015488 7.6e-18 95.1 198 30.8
BcaNung02492 Brassica carinata HOM05D006860 ORTHO05D015488 9.9e-18 94.7 198 30.3
BraA03t14422Z Brassica rapa HOM05D006860 ORTHO05D015488 1.3e-17 94.4 198 30.3
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 1.3e-17 94.4 114 48.2
A03p53590 Brassica napus HOM05D006860 ORTHO05D015488 3.8e-17 92.8 209 32.5
BraA03t14423Z Brassica rapa HOM05D006860 ORTHO05D028065 3.8e-17 92.8 208 32.7
BolC7t45689H Brassica oleracea HOM05D006860 ORTHO05D015488 4.9e-17 92.4 198 30.3
BcaNung01688 Brassica carinata HOM05D006860 ORTHO05D015488 6.4e-17 92.0 199 30.7
A03p53570 Brassica napus HOM05D006860 ORTHO05D028065 6.4e-17 92.0 208 32.2
A03p53560 Brassica napus HOM05D006860 ORTHO05D015488 8.4e-17 91.7 198 30.8
C07p51910 Brassica napus HOM05D006860 ORTHO05D028065 1.1e-16 91.3 208 32.7
BraA03t14425Z Brassica rapa HOM05D006860 ORTHO05D015488 1.1e-16 91.3 205 32.7
BcaB03g15468 Brassica carinata HOM05D000561 ORTHO05D009547 3.2e-16 89.7 193 34.2
BcaNung02490 Brassica carinata HOM05D006860 ORTHO05D015488 3.5e-15 86.3 206 30.1
Ciclev10010734m.g Citrus clementina HOM05D006860 ORTHO05D009547 4.6e-15 85.9 111 45.0
BcaB03g15470 Brassica carinata HOM05D006860 ORTHO05D009547 1.0e-14 84.7 193 32.1
BolC7t45690H Brassica oleracea HOM05D006860 ORTHO05D028065 1.3e-14 84.3 208 30.8
BcaNung01686 Brassica carinata HOM05D006860 ORTHO05D009547 1.1e-13 81.3 209 29.7
C07p51920 Brassica napus HOM05D006860 ORTHO05D015488 1.1e-13 81.3 203 29.1
BolC7t45692H Brassica oleracea HOM05D006860 ORTHO05D015488 1.1e-13 81.3 203 29.1
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 5.6e-13 79.0 58 65.5
EL10Ac8g19726 Beta vulgaris HOM05D006860 ORTHO05D009547 9.6e-13 78.2 71 52.1
BcaNung01685 Brassica carinata HOM05D006860 ORTHO05D009547 9.6e-13 78.2 205 27.8
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 4.0e-11 72.8 57 59.6
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 5.3e-11 72.4 75 53.3
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 1.5e-10 70.9 59 61.0
Ciclev10018172m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.7e-09 67.4 64 48.4
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 2.2e-09 67.0 61 60.7
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 7.9e-07 58.5 194 28.4


User provided reference genes

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