Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.0e-91 339.0 160 100.0
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 6.3e-77 290.8 161 83.9
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 7.8e-75 283.9 162 82.7
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 8.6e-74 280.4 162 82.1
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.9e-73 279.3 160 80.6
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.6e-72 275.0 136 94.1
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 3.7e-69 265.0 160 75.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 6.2e-64 247.7 160 69.4
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.4e-60 235.7 149 66.4
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 3.5e-59 231.9 163 63.8
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.1e-57 226.9 161 68.3
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 2.5e-57 225.7 160 63.1
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 7.3e-57 224.2 163 60.1
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 7.3e-57 224.2 155 64.5
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.1e-56 222.6 160 63.8
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.8e-56 222.2 140 71.4
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 3.6e-56 221.9 150 67.3
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.4e-55 219.9 140 69.3
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.4e-55 219.9 142 67.6
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 6.8e-55 217.6 144 69.4
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 6.8e-55 217.6 146 68.5
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 8.9e-55 217.2 142 66.9
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 8.9e-55 217.2 134 67.9
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 8.9e-55 217.2 149 65.8
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 2.0e-54 216.1 159 60.4
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.6e-54 215.7 166 60.2
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 2.6e-54 215.7 149 65.8
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 3.4e-54 215.3 155 63.9
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.3e-53 213.4 164 60.4
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.3e-53 213.4 146 67.8
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.3e-53 213.4 147 66.0
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.7e-53 213.0 146 67.8
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 2.9e-53 212.2 160 61.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 2.9e-53 212.2 138 68.8
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.7e-53 211.8 146 65.1
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 4.9e-53 211.5 149 65.1
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 4.9e-53 211.5 123 74.0
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 4.9e-53 211.5 154 64.3
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 8.3e-53 210.7 158 60.1
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 8.3e-53 210.7 154 64.3
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 8.3e-53 210.7 161 59.0
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.1e-52 210.3 138 68.1
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.4e-52 209.9 149 65.1
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.4e-52 209.1 159 59.7
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.4e-52 209.1 142 68.3
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 2.4e-52 209.1 145 67.6
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 3.2e-52 208.8 147 65.3
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 4.1e-52 208.4 158 60.1
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.1e-52 208.4 143 67.1
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 4.1e-52 208.4 147 63.9
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 5.4e-52 208.0 146 63.7
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 7.1e-52 207.6 154 63.0
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 9.2e-52 207.2 143 67.1
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 1.2e-51 206.8 119 75.6
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.2e-51 206.8 160 60.0
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.2e-51 206.8 136 67.6
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.1e-51 206.1 143 68.5
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.7e-51 205.7 142 65.5
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 3.5e-51 205.3 133 66.2
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 3.5e-51 205.3 127 68.5
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 6.0e-51 204.5 121 72.7
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 7.8e-51 204.1 148 64.9
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 7.8e-51 204.1 140 68.6
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.7e-50 203.0 144 67.4
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.3e-50 202.6 146 63.7
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.0e-50 202.2 163 60.7
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.5e-49 199.9 140 65.7
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.5e-49 199.1 137 65.0
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 2.5e-49 199.1 139 66.2
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 3.3e-49 198.7 165 57.0
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.3e-49 198.4 129 69.0
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 6.2e-48 194.5 156 61.5
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 8.1e-48 194.1 142 62.7
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 2.4e-47 192.6 141 61.7
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 5.2e-47 191.4 142 62.7
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 6.8e-47 191.0 140 62.1
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 6.8e-47 191.0 154 55.2
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 8.9e-47 190.7 134 62.7
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.5e-46 189.9 139 61.9
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.5e-46 189.9 149 61.7
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 4.4e-46 188.3 141 60.3
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 4.4e-46 188.3 142 62.0
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 5.8e-46 188.0 118 72.0
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 4.9e-45 184.9 145 64.1
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.9e-45 184.9 138 61.6
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 8.4e-45 184.1 137 60.6
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 8.4e-45 184.1 137 60.6
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 8.4e-45 184.1 138 59.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 8.4e-45 184.1 154 55.2
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 8.4e-45 184.1 166 56.0
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 2.4e-44 182.6 138 58.7
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 2.4e-44 182.6 160 59.4
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 5.4e-44 181.4 138 59.4
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 9.2e-44 180.6 138 64.5
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.6e-43 179.9 138 60.1
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.7e-43 179.1 158 57.0
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.7e-43 179.1 147 56.5
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.7e-43 179.1 147 56.5
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 6.6e-42 174.5 110 68.2
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 7.3e-41 171.0 140 50.7
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 2.8e-40 169.1 140 52.1
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 9.3e-36 154.1 103 66.0
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 2.3e-34 149.4 95 69.5
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 5.8e-30 134.8 118 57.6
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 7.6e-30 134.4 135 47.4
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.5e-27 125.6 75 73.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 4.6e-27 125.2 117 47.0
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 7.9e-27 124.4 88 55.7
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 8.7e-26 120.9 94 56.4
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.9e-25 119.8 92 57.6
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 4.3e-25 118.6 74 67.6
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.8e-23 113.2 114 41.2
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.0e-23 112.1 62 85.5
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.6e-22 109.4 142 42.3
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 3.8e-21 105.5 120 45.8
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 6.4e-21 104.8 73 63.0
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.1e-20 104.0 89 49.4
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.6e-19 100.1 62 77.4
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.6e-19 100.1 84 45.2
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 2.5e-17 92.8 87 48.3
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 2.8e-16 89.4 91 44.0
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 5.3e-15 85.1 91 38.5
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 8.4e-13 77.8 63 54.0
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.9e-09 66.6 54 57.4
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 9.7e-09 64.3 70 42.9
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 8.2e-08 61.2 58 51.7
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 4.1e-07 58.9 88 40.9
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.0e-06 56.6 36 63.9
GSVIVG01029385001 Vitis vinifera HOM05D005641 ORTHO05D007953 4.5e-06 55.5 32 68.8


User provided reference genes

Program Settings