Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.3e-48 196.1 98 100.0
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 5.7e-36 154.1 87 87.4
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 5.2e-21 104.4 79 62.0
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 2.9e-16 88.6 78 57.7
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 6.5e-16 87.4 72 59.7
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.1e-15 86.7 72 58.3
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 1.1e-15 86.7 78 52.6
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.5e-15 85.5 77 55.8
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 4.2e-15 84.7 72 56.9
Sopen09g031600 Solanum pennellii HOM05D005136 ORTHO05D024799 4.2e-15 84.7 78 52.6
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 5.5e-15 84.3 73 56.2
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 5.5e-15 84.3 72 56.9
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.5e-15 84.3 72 56.9
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 5.5e-15 84.3 72 56.9
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 7.2e-15 84.0 75 54.7
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 7.2e-15 84.0 72 56.9
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 9.4e-15 83.6 72 54.2
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 9.4e-15 83.6 74 54.1
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.2e-14 83.2 72 55.6
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.2e-14 83.2 72 55.6
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-14 83.2 72 56.9
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-14 83.2 72 56.9
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.2e-14 83.2 72 56.9
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.2e-14 83.2 72 55.6
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 2.1e-14 82.4 72 55.6
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 2.7e-14 82.0 72 55.6
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 2.7e-14 82.0 79 53.2
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 3.6e-14 81.6 72 52.8
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 3.6e-14 81.6 77 54.5
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 3.6e-14 81.6 72 55.6
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 4.7e-14 81.3 72 54.2
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 4.7e-14 81.3 72 54.2
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 6.1e-14 80.9 72 52.8
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 6.1e-14 80.9 72 54.2
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 6.1e-14 80.9 72 54.2
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 6.1e-14 80.9 78 47.4
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 8.0e-14 80.5 72 52.8
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 8.0e-14 80.5 72 54.2
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 8.0e-14 80.5 72 54.2
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 8.0e-14 80.5 72 54.2
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 8.0e-14 80.5 72 55.6
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 8.0e-14 80.5 73 54.8
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.0e-13 80.1 72 54.2
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.4e-13 79.7 72 55.6
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.8e-13 79.3 72 51.4
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.8e-13 79.3 72 51.4
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 1.8e-13 79.3 72 52.8
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.8e-13 79.3 72 55.6
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 2.3e-13 79.0 72 52.8
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 2.3e-13 79.0 72 54.2
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 54.2
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 54.2
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 54.2
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.0e-13 78.6 69 56.5
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.0e-13 78.6 69 56.5
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 52.8
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 51.4
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 52.8
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 48.6
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 48.6
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 3.0e-13 78.6 72 51.4
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 4.0e-13 78.2 72 52.8
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 4.0e-13 78.2 72 50.0
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 4.0e-13 78.2 73 49.3
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 5.2e-13 77.8 72 52.8
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 5.2e-13 77.8 72 52.8
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 5.2e-13 77.8 72 52.8
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 5.2e-13 77.8 72 54.2
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 5.2e-13 77.8 72 52.8
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 5.2e-13 77.8 72 52.8
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 6.8e-13 77.4 72 54.2
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 8.8e-13 77.0 72 48.6
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 8.8e-13 77.0 72 51.4
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.2e-12 76.6 72 50.0
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.2e-12 76.6 77 50.6
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.2e-12 76.6 72 50.0
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 1.2e-12 76.6 72 51.4
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.2e-12 76.6 72 51.4
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 1.2e-12 76.6 78 48.7
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.5e-12 76.3 72 48.6
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.5e-12 76.3 72 51.4
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.5e-12 76.3 72 50.0
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.5e-12 76.3 72 50.0
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.5e-12 76.3 72 51.4
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.5e-12 76.3 72 51.4
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.0e-12 75.9 72 50.0
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 2.0e-12 75.9 72 51.4
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 2.6e-12 75.5 72 48.6
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 2.6e-12 75.5 72 48.6
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.4e-12 75.1 72 51.4
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 3.4e-12 75.1 72 50.0
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 3.4e-12 75.1 72 50.0
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 4.4e-12 74.7 72 48.6
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 4.4e-12 74.7 76 47.4
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.4e-12 74.7 72 51.4
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.4e-12 74.7 72 51.4
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 4.4e-12 74.7 72 50.0
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 4.4e-12 74.7 82 46.3
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.7e-12 74.3 72 47.2
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 5.7e-12 74.3 77 49.4
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 7.5e-12 73.9 54 66.7
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 9.8e-12 73.6 72 48.6
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 9.8e-12 73.6 72 50.0
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.3e-11 73.2 72 47.2
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.3e-11 73.2 72 47.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.3e-11 73.2 72 47.2
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.3e-11 73.2 72 50.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 1.3e-11 73.2 72 47.2
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.7e-11 72.8 72 47.2
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 2.2e-11 72.4 72 48.6
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 2.8e-11 72.0 79 49.4
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 3.7e-11 71.6 72 45.8
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.7e-11 71.6 66 54.5
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 3.7e-11 71.6 72 45.8
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 3.7e-11 71.6 72 48.6
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 6.3e-11 70.9 77 45.5
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 6.3e-11 70.9 72 48.6
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 1.4e-10 69.7 69 49.3
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.8e-10 69.3 75 45.3
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 1.8e-10 69.3 69 47.8
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 3.1e-10 68.6 72 45.8
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.1e-10 68.2 73 43.8
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-09 66.6 69 46.4
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 2.0e-09 65.9 74 44.6
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 2.7e-09 65.5 69 44.9
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 2.7e-09 65.5 72 43.1
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.7e-09 65.5 72 45.8
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.5e-09 65.1 69 46.4
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.5e-09 64.7 69 44.9
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 7.7e-09 63.9 72 44.4
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 2.2e-08 62.4 72 45.8
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 2.9e-08 62.0 72 41.7
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 3.8e-08 61.6 66 47.0
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 8.5e-08 60.5 69 43.5
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 1.5e-07 59.7 69 49.3
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.5e-07 59.7 73 39.7
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 4.2e-07 58.2 73 37.0
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 4.2e-07 58.2 60 45.0
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 5.5e-07 57.8 72 37.5
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 2.1e-06 55.8 79 41.8


User provided reference genes

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