Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.0e-141 505.0 297 100.0
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.3e-127 458.8 279 98.2
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.9e-111 406.4 284 86.6
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 6.2e-110 401.4 279 87.1
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 7.3e-103 377.9 288 77.1
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.1e-102 376.3 278 83.8
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 8.4e-99 364.4 284 78.9
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.1e-97 359.8 260 71.9
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 7.8e-97 357.8 279 80.6
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 3.0e-96 355.9 285 75.8
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 6.6e-96 354.8 285 77.2
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.4e-93 347.1 280 77.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-93 346.7 286 77.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.1e-93 345.9 290 76.9
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.5e-92 343.6 285 71.9
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.9e-92 340.9 295 71.2
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.3e-91 340.5 284 76.4
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.7e-91 340.1 284 72.2
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 6.4e-91 338.2 284 75.4
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 8.4e-91 337.8 284 70.8
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.4e-90 337.0 285 76.5
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.4e-90 336.3 285 74.0
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 4.2e-90 335.5 285 76.1
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 4.2e-90 335.5 287 76.7
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.2e-89 334.0 285 69.5
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.2e-89 334.0 283 71.0
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.2e-89 334.0 285 75.1
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.1e-89 333.2 283 74.6
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.1e-89 333.2 285 74.0
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 6.0e-89 331.6 279 77.8
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.3e-88 330.5 285 70.5
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.3e-88 329.7 287 75.6
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 3.9e-88 328.9 285 74.7
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 5.1e-88 328.6 287 61.7
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 5.1e-88 328.6 284 62.7
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 5.1e-88 328.6 284 77.5
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.5e-87 327.0 291 73.5
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.9e-87 326.6 287 65.2
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.5e-87 326.2 285 69.5
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 7.4e-87 324.7 285 70.5
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.8e-86 322.8 283 77.0
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 3.7e-86 322.4 285 73.3
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 8.1e-86 321.2 284 72.2
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.4e-85 320.5 319 66.1
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.2e-84 317.4 289 58.8
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.5e-84 317.0 291 73.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 2.0e-84 316.6 279 75.6
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 2.0e-84 316.6 280 61.1
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.6e-84 316.2 256 79.7
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.6e-84 316.2 283 60.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.6e-84 316.2 284 61.3
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.4e-84 315.8 293 69.6
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 5.8e-84 315.1 280 62.1
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 7.6e-84 314.7 286 72.7
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 9.9e-84 314.3 256 79.3
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 9.9e-84 314.3 285 69.8
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.3e-83 313.9 286 70.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.7e-83 313.5 230 87.4
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.2e-83 313.2 284 68.0
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 2.2e-83 313.2 284 72.9
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.8e-83 312.4 284 73.2
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 3.8e-83 312.4 286 71.7
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.6e-81 307.0 317 56.8
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 2.1e-81 306.6 289 71.6
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 3.0e-80 302.8 283 68.2
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.5e-79 300.4 284 60.2
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.5e-79 299.7 286 60.8
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 2.5e-79 299.7 284 68.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 4.3e-79 298.9 283 60.1
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 5.6e-79 298.5 287 61.3
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 2.1e-78 296.6 287 61.3
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 4.8e-78 295.4 287 61.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 6.2e-78 295.0 286 60.1
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 6.2e-78 295.0 283 71.7
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.2e-78 295.0 284 57.7
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 8.2e-78 294.7 318 66.7
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 5.3e-77 292.0 263 72.2
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 9.0e-77 291.2 242 78.5
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.2e-76 290.8 286 61.9
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.2e-76 290.8 284 57.0
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.0e-76 290.0 292 65.8
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 4.5e-76 288.9 287 57.5
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 5.8e-76 288.5 287 57.5
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 7.6e-76 288.1 287 57.5
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.7e-75 287.0 259 61.8
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.9e-75 285.4 298 66.4
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.1e-74 284.3 284 58.5
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 7.1e-74 281.6 287 58.9
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 7.1e-74 281.6 298 65.8
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 7.1e-74 281.6 289 55.7
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.6e-73 280.4 283 55.5
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.3e-72 276.6 287 65.5
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 3.0e-72 276.2 286 55.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 5.1e-72 275.4 297 62.3
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 8.7e-72 274.6 230 79.6
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 3.3e-71 272.7 247 62.3
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 9.7e-71 271.2 287 54.0
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 9.7e-71 271.2 284 68.7
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.6e-70 270.4 284 67.6
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.2e-70 270.0 273 56.8
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 6.3e-70 268.5 289 63.3
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.4e-69 267.3 243 72.4
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.8e-69 266.9 284 58.5
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.5e-68 263.8 284 51.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 3.2e-66 256.1 253 69.2
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.1e-65 253.4 233 60.5
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.7e-65 253.1 334 52.7
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.7e-65 253.1 334 52.7
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.0e-64 251.1 285 52.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 9.7e-63 244.6 231 58.4
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 2.8e-62 243.0 238 73.5
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 4.8e-62 242.3 286 51.0
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 4.8e-62 242.3 232 73.7
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 6.3e-62 241.9 236 59.7
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 8.2e-62 241.5 232 73.7
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.5e-60 237.3 328 54.3
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.5e-60 237.3 328 54.3
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 6.5e-59 231.9 294 50.3
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.9e-58 230.3 244 65.2
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.5e-58 229.9 188 79.3
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 7.9e-57 224.9 232 70.3
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.1e-55 221.1 234 70.5
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 9.7e-55 218.0 192 75.0
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 6.7e-48 195.3 245 65.3
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-46 190.3 277 45.5
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.4e-45 187.6 168 81.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 4.1e-45 186.0 241 47.7
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 3.5e-44 183.0 223 50.7
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.0e-43 181.4 283 40.6
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 5.0e-43 179.1 232 48.3
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 5.0e-43 179.1 232 48.3
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 5.2e-40 169.1 193 68.4
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 2.9e-35 153.3 107 72.9
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.0e-35 152.5 146 69.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 9.4e-34 148.3 249 42.2
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.8e-32 142.1 119 62.2
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 8.8e-32 141.7 149 73.8
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-30 137.9 162 54.3
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 5.4e-29 132.5 171 45.0
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.7e-27 127.5 224 50.9
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.8e-27 126.3 298 44.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 4.7e-25 119.4 217 53.5
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 8.9e-24 115.2 301 32.9
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.3e-22 111.3 86 69.8
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.3e-19 101.3 71 77.5
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.7e-19 100.9 155 61.3
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-16 90.1 48 83.3
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 5.2e-16 89.4 91 51.6
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.2e-14 84.0 52 71.2
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 8.3e-14 82.0 46 76.1
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.7e-12 77.0 110 40.0
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 7.3e-10 68.9 42 69.0
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.8e-09 67.0 46 73.9
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 8.0e-09 65.5 46 71.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 1.4e-08 64.7 105 39.0
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 6.4e-06 55.8 102 29.4


User provided reference genes

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