Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.0e-47 193.0 92 100.0
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 5.3e-44 180.6 91 94.5
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 3.2e-41 171.4 108 80.6
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 3.2e-41 171.4 108 80.6
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 3.2e-41 171.4 108 80.6
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 80.4
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 7.2e-41 170.2 107 81.3
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 9.4e-41 169.9 108 79.6
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 9.4e-41 169.9 107 79.4
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 9.4e-41 169.9 108 79.6
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 1.6e-40 169.1 107 79.4
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 1.6e-40 169.1 107 80.4
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 1.6e-40 169.1 107 80.4
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 1.6e-40 169.1 107 80.4
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 2.1e-40 168.7 107 80.4
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 2.7e-40 168.3 107 80.4
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 3.6e-40 167.9 106 80.2
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 4.7e-40 167.5 106 79.2
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 4.7e-40 167.5 107 80.4
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 4.7e-40 167.5 107 80.4
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 4.7e-40 167.5 107 80.4
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 4.7e-40 167.5 107 80.4
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 4.7e-40 167.5 107 80.4
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 4.7e-40 167.5 107 80.4
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 4.7e-40 167.5 107 80.4
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 7.9e-40 166.8 107 79.4
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 2.3e-39 165.2 107 79.4
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 2.3e-39 165.2 107 79.4
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 2.3e-39 165.2 107 79.4
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.3e-39 165.2 107 76.6
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.0e-39 164.9 107 78.5
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.0e-39 164.9 107 78.5
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.9e-39 164.5 108 77.8
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 6.7e-39 163.7 108 75.9
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.4e-38 161.0 107 77.6
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.7e-38 160.6 91 87.9
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 5.7e-38 160.6 102 80.4
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 5.7e-38 160.6 102 80.4
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 3.7e-37 157.9 102 78.4
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.4e-36 156.0 106 73.6
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 1.8e-36 155.6 107 73.8
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 4.1e-36 154.5 99 77.8
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 3.5e-35 151.4 98 79.6
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 7.7e-35 150.2 108 72.2
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 6.5e-34 147.1 107 72.9
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 4.2e-33 144.4 98 76.5
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 8.0e-32 140.2 91 79.1
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 8.0e-32 140.2 91 79.1
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 1.8e-31 139.0 98 74.5
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 3.0e-31 138.3 104 68.3
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 7.5e-30 133.7 106 67.9
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 2.2e-29 132.1 103 68.0
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 1.8e-28 129.0 91 73.6
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.3e-28 127.5 90 74.4
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 2.7e-27 125.2 92 73.9
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 4.5e-27 124.4 120 60.8
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 3.8e-26 121.3 81 76.5
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.5e-25 119.4 92 71.7
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 9.4e-25 116.7 81 75.3
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.6e-24 114.8 81 72.8
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.0e-23 113.2 81 70.4
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 3.0e-23 111.7 81 69.1
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 1.5e-22 109.4 96 66.7
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.0e-22 109.0 81 69.1
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.0e-22 109.0 81 71.6
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.0e-22 109.0 81 71.6
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.7e-22 107.5 81 69.1
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 5.7e-22 107.5 93 63.4
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.2e-21 105.5 81 70.4
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.2e-21 105.5 81 70.4
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.2e-21 105.5 81 70.4
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 6.3e-21 104.0 80 70.0
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.3e-21 103.6 75 70.7
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 8.3e-21 103.6 81 66.7
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 3.1e-20 101.7 84 66.7
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 9.1e-20 100.1 73 71.2
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 9.1e-20 100.1 73 71.2
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 1.6e-19 99.4 50 96.0
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 1.6e-19 99.4 50 96.0
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 1.6e-19 99.4 50 96.0
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 1.6e-19 99.4 50 96.0
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 1.6e-19 99.4 50 96.0
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 5.9e-19 97.4 50 94.0
BolSC43t60811H Brassica oleracea HOM05D000963 ORTHO05D004715 2.2e-18 95.5 46 97.8
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 3.8e-18 94.7 91 57.1
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 1.1e-17 93.2 50 92.0
Oeu054713.1 Olea europaea HOM05D000963 ORTHO05D004715 1.1e-17 93.2 48 93.8
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-17 92.8 51 92.2
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 1.5e-17 92.8 80 65.0
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 5.5e-17 90.9 49 85.7
BraSC179t45779Z Brassica rapa HOM05D000963 ORTHO05D004715 7.2e-17 90.5 44 97.7
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.2e-16 89.7 40 100.0
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 1.2e-16 89.7 48 89.6
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-16 88.2 40 97.5
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 4.7e-16 87.8 65 70.8
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 6.1e-16 87.4 65 70.8
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 6.1e-16 87.4 65 69.2
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 8.0e-16 87.0 65 70.8
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 1.0e-15 86.7 40 95.0
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-15 86.3 40 95.0
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 1.4e-15 86.3 46 87.0
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.8e-15 85.9 40 95.0
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 3.0e-15 85.1 40 92.5
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 3.0e-15 85.1 40 92.5
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 5.2e-15 84.3 87 59.8
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 8.8e-15 83.6 65 66.2
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.2e-14 83.2 40 90.0
Lj4g0000207 Lotus japonicus HOM05D000963 ORTHO05D004715 1.5e-14 82.8 41 95.1
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.4e-14 81.6 65 66.2
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 7.5e-14 80.5 65 64.6
arahy.Tifrunner.gnm1.ann1.HN8ZWX Arachis hypogaea HOM05D000963 ORTHO05D004715 9.8e-14 80.1 41 92.7
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 1.3e-13 79.7 65 64.6
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 1.3e-13 79.7 81 55.6
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 2.2e-13 79.0 81 56.8
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 2.2e-13 79.0 40 87.5
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 2.8e-13 78.6 73 60.3
Thecc.09G087300 Theobroma cacao HOM05D000963 ORTHO05D004715 2.8e-13 78.6 43 90.7
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 1.4e-12 76.3 50 76.0
FAN06G2610 Fragaria x ananassa HOM05D000963 ORTHO05D004715 1.8e-12 75.9 39 92.3
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 5.4e-12 74.3 38 89.5
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 9.2e-12 73.6 40 82.5
DCAR_017253 Daucus carota HOM05D000963 ORTHO05D004715 2.0e-11 72.4 40 85.0
Sc21g0003630 Simmondsia chinensis HOM05D000556 ORTHO05D000404 3.3e-09 65.1 59 62.7
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 4.3e-09 64.7 41 80.5
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 4.3e-09 64.7 29 96.6
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 9.5e-09 63.5 29 96.6
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 1.6e-08 62.8 27 100.0
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 1.2e-06 56.6 25 100.0
Oeu033793.1 Olea europaea HOM05D001982 ORTHO05D003938 2.0e-06 55.8 54 57.4
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 3.4e-06 55.1 25 96.0


User provided reference genes

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