Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 4.3e-189 664.5 325 100.0
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.2e-137 492.7 323 78.9
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 9.2e-99 364.4 316 61.4
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 3.5e-98 362.5 316 61.1
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.0e-97 360.9 322 61.2
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 3.3e-96 355.9 315 59.7
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 8.0e-95 351.3 311 60.1
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 4.1e-91 339.0 330 55.8
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 2.0e-90 336.7 318 57.5
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 6.6e-89 331.6 316 58.2
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 5.6e-88 328.6 328 52.7
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 4.7e-87 325.5 318 55.0
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 1.4e-86 323.9 280 61.4
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 4.4e-85 318.9 268 64.2
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.8e-85 318.5 306 55.2
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.7e-84 317.0 311 54.7
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 6.4e-84 315.1 308 54.2
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.1e-83 314.3 311 55.6
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 5.4e-83 312.0 311 53.1
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.2e-82 310.8 311 53.1
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.5e-82 309.3 312 52.2
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.3e-81 307.4 295 55.9
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.3e-81 306.6 316 54.1
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 5.1e-81 305.4 302 53.3
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 8.6e-81 304.7 311 52.4
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.1e-79 300.1 320 54.4
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.8e-79 299.7 315 54.3
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 8.1e-79 298.1 311 50.5
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 8.1e-79 298.1 307 51.8
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 8.1e-79 298.1 316 48.7
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 5.2e-78 295.4 321 52.0
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 6.8e-78 295.0 301 51.8
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 6.8e-78 295.0 303 52.8
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.2e-77 294.3 313 54.0
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 4.4e-77 292.4 311 50.8
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 7.6e-77 291.6 317 49.5
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.7e-76 290.4 312 51.3
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 3.8e-76 289.3 331 50.2
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.8e-76 289.3 308 51.6
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 7.1e-75 285.0 303 52.8
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 7.1e-75 285.0 313 47.9
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.1e-74 283.5 328 47.6
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 2.7e-74 283.1 306 50.0
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 2.7e-74 283.1 295 52.5
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 2.7e-74 283.1 328 46.6
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 7.8e-74 281.6 307 52.1
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 5.1e-73 278.9 320 46.6
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 5.1e-73 278.9 320 46.6
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 5.1e-73 278.9 313 52.1
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.5e-72 277.3 293 52.2
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.5e-72 276.6 305 48.5
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.8e-71 273.1 369 43.4
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 8.1e-71 271.6 304 50.7
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 8.1e-71 271.6 316 46.8
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 2.4e-70 270.0 298 50.3
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 8.9e-70 268.1 292 51.0
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 8.9e-70 268.1 292 51.0
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.2e-69 267.7 297 52.9
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.6e-69 266.5 297 52.5
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 5.8e-69 265.4 295 52.9
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 5.8e-69 265.4 312 48.1
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 7.6e-69 265.0 295 52.9
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.7e-68 263.8 275 52.0
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.2e-68 263.5 301 51.8
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.9e-68 263.1 303 48.2
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.9e-67 260.4 289 48.8
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 5.4e-67 258.8 291 48.5
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 7.1e-67 258.5 307 48.9
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 9.3e-67 258.1 303 48.2
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.2e-66 257.7 303 48.5
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.2e-66 257.7 303 48.5
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.8e-66 255.0 309 47.2
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 1.0e-65 254.6 302 47.0
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.7e-65 253.8 307 45.9
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 2.3e-65 253.4 291 48.1
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.9e-65 252.7 248 57.7
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 5.1e-65 252.3 288 48.6
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.1e-64 251.1 303 47.5
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.1e-64 251.1 284 49.3
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.5e-64 250.0 281 48.4
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.3e-64 249.6 275 48.7
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.6e-63 247.3 279 48.7
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 6.2e-63 245.4 307 45.3
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.8e-62 243.8 267 50.9
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 2.4e-62 243.4 301 44.5
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 4.0e-62 242.7 307 45.3
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.5e-61 240.7 274 50.0
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.4e-59 233.4 307 45.9
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 4.6e-58 229.2 218 60.6
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.8e-57 227.3 261 47.9
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.8e-57 227.3 303 45.2
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 6.7e-57 225.3 224 54.9
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 2.5e-56 223.4 288 47.2
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.6e-56 221.5 262 48.9
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.1e-55 220.3 300 41.7
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 4.8e-55 219.2 278 45.7
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 8.1e-55 218.4 155 72.3
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.0e-54 216.1 298 44.6
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 6.9e-54 215.3 223 53.4
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 6.9e-54 215.3 224 52.7
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.5e-53 214.2 206 55.3
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 5.8e-53 212.2 288 43.8
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.3e-52 211.1 289 42.6
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.3e-52 211.1 293 43.7
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.9e-52 209.1 227 51.1
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.4e-51 207.6 290 46.2
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 9.3e-51 204.9 290 45.2
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 4.6e-50 202.6 280 44.6
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.5e-48 197.6 222 48.2
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.5e-48 196.8 290 42.8
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 4.0e-46 189.5 283 42.4
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.3e-44 184.5 148 58.1
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.7e-44 184.1 236 46.6
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.3e-39 167.9 324 33.6
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 2.1e-39 167.2 289 39.4
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 9.3e-35 151.8 294 34.0
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 7.9e-34 148.7 187 46.0
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 3.0e-33 146.7 291 36.1
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 8.7e-33 145.2 289 34.6
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 1.3e-31 141.4 298 32.6
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 2.8e-31 140.2 302 36.4
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.8e-31 140.2 177 46.9
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 5.3e-30 136.0 213 37.6
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 9.1e-30 135.2 130 52.3
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.3e-28 131.3 285 34.0
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.3e-28 131.3 119 52.1
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.7e-28 131.0 127 52.8
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.5e-27 127.1 230 34.8
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 7.2e-27 125.6 115 60.0
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 2.3e-25 120.6 140 47.1
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 2.0e-24 117.5 106 54.7
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 3.4e-21 106.7 113 54.0
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.3e-20 104.8 262 32.4
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.5e-19 100.5 117 47.0
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 2.3e-17 94.0 233 33.9
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 3.9e-17 93.2 101 49.5
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 6.7e-17 92.4 95 51.6
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 1.8e-14 84.3 61 63.9
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 1.8e-14 84.3 61 63.9
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 2.6e-13 80.5 198 33.8
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 4.5e-13 79.7 59 61.0
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 5.9e-13 79.3 109 39.4
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.5e-11 74.7 62 56.5
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 2.7e-10 70.5 128 35.2
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.0e-09 68.6 61 55.7
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 3.7e-07 60.1 202 29.2
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 4.1e-06 56.6 102 37.3


User provided reference genes

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