Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 0.0e+00 1327.4 701 100.0
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 0.0e+00 1144.0 678 91.6
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 9.5e-202 707.6 668 65.7
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 2.6e-199 699.5 668 65.4
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.4e-197 693.0 701 62.9
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-188 662.5 676 62.1
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.1e-181 641.0 672 61.0
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 9.5e-109 398.7 730 41.9
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.9e-96 357.8 725 41.2
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 3.0e-86 323.9 686 38.5
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 5.6e-85 319.7 696 39.2
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.7e-81 308.1 695 40.1
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.6e-76 291.6 710 38.7
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.1e-76 291.2 678 37.0
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.4e-74 283.9 722 36.0
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 3.0e-70 270.8 709 35.1
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 8.7e-70 269.2 707 37.2
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.1e-69 268.9 685 34.2
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.1e-69 268.9 772 35.0
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.5e-69 268.5 754 37.9
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.9e-69 268.1 671 35.6
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 3.3e-69 267.3 220 70.0
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.3e-68 265.4 762 37.0
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.4e-67 261.9 727 34.7
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 3.1e-67 260.8 788 32.9
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 3.4e-66 257.3 697 38.2
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.3e-65 255.4 686 39.4
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.2e-65 254.6 582 37.8
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 3.5e-63 247.3 677 34.3
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.6e-60 237.3 679 33.0
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.2e-60 236.5 700 33.9
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.1e-59 235.7 697 35.4
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.4e-59 235.3 663 34.4
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 3.1e-59 234.2 683 33.1
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.5e-58 231.9 679 37.4
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 8.4e-57 226.1 731 34.5
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.9e-56 224.9 675 36.0
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 7.1e-56 223.0 168 73.2
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 9.3e-56 222.6 715 32.9
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 9.3e-56 222.6 715 32.9
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.2e-55 222.2 680 36.3
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.7e-55 221.1 656 32.6
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.0e-54 219.2 677 36.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.9e-53 214.9 654 34.6
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.5e-53 214.5 703 35.8
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.1e-52 211.5 752 31.0
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 6.2e-52 209.9 651 32.0
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.1e-51 209.1 692 36.0
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.4e-51 208.0 676 30.6
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 9.0e-51 206.1 649 35.6
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 8.4e-49 199.5 796 31.4
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.6e-47 195.3 663 32.1
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.0e-47 193.4 683 30.5
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 7.9e-47 193.0 691 33.1
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 1.1e-45 189.1 719 33.9
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-45 189.1 730 34.0
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 3.3e-45 187.6 685 32.7
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 7.4e-45 186.4 720 33.3
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.8e-44 184.5 151 68.2
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 4.1e-43 180.6 654 31.2
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 3.4e-42 177.6 709 27.6
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 5.9e-42 176.8 180 57.2
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.7e-41 175.3 610 31.6
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.4e-40 172.2 671 30.1
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 5.5e-40 170.2 203 59.6
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 5.5e-40 170.2 674 32.9
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.6e-39 168.7 684 32.5
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 5.1e-38 163.7 137 65.7
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.1e-37 162.5 602 29.7
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.9e-37 161.8 677 33.2
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.5e-37 161.4 689 33.7
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 9.7e-37 159.5 674 31.2
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 4.8e-36 157.1 669 30.2
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.3e-36 156.8 259 41.7
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.1e-35 156.0 663 29.9
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.8e-35 155.2 270 46.7
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 2.4e-35 154.8 130 81.5
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.4e-35 154.8 676 31.4
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 3.1e-35 154.5 143 69.2
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 4.1e-35 154.1 685 32.6
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 5.3e-35 153.7 642 28.3
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 6.9e-35 153.3 173 57.8
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 9.0e-35 152.9 165 55.8
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.2e-34 152.5 706 33.3
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.5e-34 152.1 657 30.4
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.5e-34 152.1 232 56.0
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 4.5e-34 150.6 165 55.2
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 5.9e-34 150.2 171 61.4
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 2.9e-33 147.9 164 53.7
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.5e-33 146.7 170 53.5
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.4e-32 145.6 694 30.8
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.4e-32 145.6 208 55.3
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.5e-32 144.8 685 32.3
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 3.2e-32 144.4 682 31.1
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 5.5e-32 143.7 88 83.0
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 9.4e-32 142.9 682 30.8
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.6e-31 142.1 682 31.7
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.6e-31 142.1 682 31.1
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 2.1e-31 141.7 254 47.6
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 2.1e-31 141.7 164 50.6
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 3.6e-31 141.0 687 27.2
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 3.6e-31 141.0 672 27.1
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 4.6e-31 140.6 646 31.3
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.6e-31 140.6 88 80.7
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.3e-30 138.3 157 55.4
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.0e-30 137.9 687 27.8
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 3.0e-30 137.9 660 31.7
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 3.0e-30 137.9 88 78.4
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 3.9e-30 137.5 687 30.9
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 8.8e-30 136.3 348 33.3
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 9.7e-29 132.9 200 44.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 9.7e-29 132.9 651 29.3
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 4.8e-28 130.6 161 64.6
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 4.8e-28 130.6 158 49.4
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.4e-27 129.0 689 31.1
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.4e-27 129.0 689 30.9
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.4e-27 128.3 660 29.2
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.2e-26 125.9 865 28.6
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.2e-26 125.9 350 32.9
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.5e-26 125.6 196 44.4
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 3.4e-26 124.4 283 37.1
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 4.5e-26 124.0 133 54.1
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.4e-24 119.0 675 24.9
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.9e-24 118.6 643 26.7
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 7.2e-24 116.7 85 70.6
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.7e-23 114.0 93 64.5
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.0e-22 112.8 168 42.9
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 3.3e-21 107.8 91 62.6
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 7.4e-21 106.7 168 43.5
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.3e-20 105.9 72 76.4
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.7e-20 105.5 677 26.6
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 3.7e-20 104.4 542 33.6
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 6.3e-20 103.6 554 30.7
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 8.2e-20 103.2 685 28.8
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 8.2e-20 103.2 168 48.8
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.1e-19 102.8 228 35.1
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 2.4e-19 101.7 667 29.2
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 7.0e-19 100.1 323 33.7
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.6e-18 99.0 209 44.0
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 3.7e-12 77.8 90 51.1
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 1.4e-11 75.9 655 27.2
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.0e-09 69.7 205 33.2


User provided reference genes

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