Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.3e-95 352.4 203 100.0
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.7e-77 291.6 159 98.1
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.6e-69 265.4 203 83.3
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.6e-69 265.4 202 84.2
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 6.4e-66 254.6 194 67.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.9e-65 253.1 200 74.0
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 9.2e-65 250.8 222 75.7
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.5e-62 242.7 200 73.0
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 4.0e-60 235.3 205 67.3
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 8.9e-60 234.2 169 77.5
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.3e-58 230.3 193 74.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.9e-58 229.2 197 71.1
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 8.4e-58 227.6 200 72.0
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.2e-56 223.8 206 61.2
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.7e-56 222.6 198 60.1
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.7e-56 222.6 198 63.6
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.3e-55 219.5 194 60.3
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 3.0e-55 219.2 195 59.5
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.0e-55 219.2 196 62.8
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.9e-55 218.8 198 60.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 3.9e-55 218.8 208 63.9
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 8.7e-55 217.6 195 59.0
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.5e-54 216.9 206 59.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.5e-54 216.9 198 62.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.5e-54 216.9 198 62.1
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.3e-54 215.7 202 64.9
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.3e-54 215.7 199 67.3
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-53 213.8 199 67.3
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.8e-53 211.8 197 61.4
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.1e-52 210.7 186 64.5
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.4e-52 209.5 202 64.9
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 3.1e-52 209.1 200 61.5
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 4.0e-52 208.8 203 59.6
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 6.9e-52 208.0 211 58.8
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.0e-52 207.6 198 60.6
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.2e-51 207.2 208 58.7
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.5e-51 206.8 199 59.8
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-51 206.8 199 59.8
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.6e-51 206.1 197 55.8
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.6e-51 206.1 201 61.7
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 3.4e-51 205.7 195 66.7
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.4e-51 205.7 190 62.1
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 4.4e-51 205.3 196 62.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.8e-51 204.9 203 63.5
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 5.8e-51 204.9 208 58.2
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.9e-51 204.1 194 54.6
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.3e-50 203.8 197 58.4
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.7e-50 203.4 202 64.4
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.7e-50 203.4 195 60.0
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.9e-50 202.6 212 55.7
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 4.9e-50 201.8 189 63.5
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 6.4e-50 201.4 209 59.3
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.4e-50 201.4 194 61.3
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 6.4e-50 201.4 194 61.3
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 6.4e-50 201.4 207 65.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 8.4e-50 201.1 190 61.1
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.4e-49 200.3 197 56.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.9e-49 199.9 197 56.3
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.4e-49 199.5 196 54.6
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 3.2e-49 199.1 201 62.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.2e-49 198.7 204 61.3
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.2e-49 198.7 200 59.5
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 5.4e-49 198.4 194 52.1
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 7.1e-49 198.0 194 54.1
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-48 197.2 193 57.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-48 197.2 192 57.8
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.2e-48 197.2 192 57.8
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.2e-48 197.2 191 59.2
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.7e-48 196.1 205 58.5
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 2.7e-48 196.1 198 58.6
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.5e-48 195.7 195 56.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 4.6e-48 195.3 194 52.6
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.6e-48 195.3 184 57.6
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.6e-48 195.3 194 60.3
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 4.6e-48 195.3 194 53.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 7.9e-48 194.5 185 54.1
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 7.9e-48 194.5 194 52.1
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.0e-47 194.1 194 59.3
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.0e-47 194.1 196 56.6
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.0e-47 194.1 195 55.9
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.0e-47 194.1 195 55.9
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.0e-47 194.1 205 57.1
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.7e-47 193.4 200 56.5
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.3e-47 193.0 198 55.1
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 3.0e-47 192.6 193 57.5
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 3.0e-47 192.6 193 57.5
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.9e-47 192.2 162 63.0
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 5.1e-47 191.8 194 52.6
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 5.1e-47 191.8 200 60.0
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-46 190.7 157 63.1
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-46 190.3 193 53.9
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.5e-46 190.3 193 53.9
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.5e-46 190.3 193 53.9
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.5e-46 190.3 203 59.1
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.9e-46 189.9 195 57.9
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 5.6e-46 188.3 190 60.0
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.6e-45 186.8 201 59.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.8e-45 186.0 187 59.9
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.8e-45 185.3 197 49.2
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.4e-44 183.0 202 56.9
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 3.1e-44 182.6 155 59.4
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 3.1e-44 182.6 197 52.3
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.9e-44 181.4 202 58.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.4e-43 179.1 199 50.8
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 1.7e-42 176.8 203 51.7
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.1e-41 174.1 154 63.6
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.2e-41 172.2 200 47.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.2e-40 170.6 200 52.0
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 6.7e-39 164.9 192 46.9
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.9e-38 163.3 193 53.4
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 7.4e-38 161.4 149 54.4
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 4.8e-37 158.7 149 52.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.8e-36 156.8 178 47.8
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 3.1e-36 156.0 199 45.7
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.0e-35 153.3 150 54.7
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 4.9e-34 148.7 146 62.3
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.6e-32 143.7 202 53.5
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.6e-32 143.7 181 49.2
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.7e-32 142.9 195 42.1
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 3.5e-32 142.5 150 48.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.3e-31 140.6 197 47.2
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 8.7e-31 137.9 140 55.7
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 8.7e-31 137.9 192 41.1
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 8.7e-31 137.9 180 45.0
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.5e-30 136.3 178 44.4
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 7.4e-30 134.8 156 45.5
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.1e-29 133.3 157 43.3
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.9e-28 128.3 85 65.9
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.0e-27 126.7 102 59.8
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 7.6e-27 124.8 157 41.4
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.3e-26 124.0 150 42.0
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 8.4e-26 121.3 175 38.9
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.2e-25 119.4 167 40.1
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 7.2e-25 118.2 88 53.4
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 9.3e-25 117.9 78 59.0
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 3.0e-23 112.8 127 51.2
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.9e-22 110.2 89 46.1
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.7e-22 108.6 187 39.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 7.4e-22 108.2 133 62.4
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.6e-21 107.1 131 50.4
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 3.7e-21 105.9 83 50.6
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.1e-20 104.4 82 62.2
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.1e-20 104.4 159 39.0
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.4e-20 104.0 131 49.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.4e-20 104.0 82 53.7
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.4e-20 103.2 152 38.2
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-18 97.4 158 34.8
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.5e-18 95.1 83 45.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.6e-16 90.5 83 47.0
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.2e-13 80.1 120 48.3
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 2.8e-13 79.7 124 38.7
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 5.3e-12 75.5 104 42.3
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 9.1e-12 74.7 113 48.7
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 9.1e-12 74.7 86 39.5
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.7e-08 63.2 88 39.8
Oeu041536.1 Olea europaea HOM05D004429 ORTHO05D288779 9.7e-06 54.7 38 57.9


User provided reference genes

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