Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1365.5 653 100.0
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1317.4 646 98.0
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1285.4 653 93.7
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 0.0e+00 1267.3 653 92.5
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1256.1 653 91.4
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 0.0e+00 1246.9 647 91.5
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1149.4 653 81.6
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1124.4 730 74.8
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1122.5 652 80.2
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1114.8 650 79.4
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1113.6 686 77.1
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1110.5 651 79.1
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1109.7 666 78.8
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1107.8 650 77.1
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1107.8 649 79.4
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1106.7 646 77.4
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1104.4 650 77.2
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1103.2 642 78.5
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 0.0e+00 1102.0 671 77.5
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1098.2 650 78.3
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1097.4 651 77.4
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1096.3 652 78.1
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1096.3 651 77.1
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1090.9 647 77.0
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1090.5 647 77.1
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1088.9 651 77.0
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1088.9 651 76.5
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1088.2 651 76.2
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1086.2 651 76.5
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1084.7 651 75.9
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 0.0e+00 1083.9 654 78.0
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 0.0e+00 1082.8 641 79.4
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1082.4 649 76.4
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1078.9 651 75.6
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1077.4 651 75.6
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1076.6 696 73.1
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 0.0e+00 1075.8 639 78.4
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 4.5e-312 1074.3 646 76.5
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 4.5e-312 1073.9 647 77.0
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 8.9e-312 1073.2 649 75.7
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 4.0e-311 1070.8 597 84.4
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 5.4e-311 1070.5 613 81.2
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 6.7e-311 1070.1 651 75.0
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 8.9e-311 1069.7 647 76.7
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 2.0e-310 1068.5 651 76.5
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 4.4e-310 1067.4 637 77.1
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 1.7e-309 1065.4 647 76.2
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 1.7e-309 1065.4 647 75.4
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 6.4e-309 1063.5 646 76.2
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 1.4e-308 1062.4 620 80.3
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 1.4e-308 1062.4 651 75.4
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 2.0e-307 1058.5 652 75.2
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 3.5e-307 1057.7 645 75.2
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 3.5e-307 1057.7 794 66.4
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 6.0e-307 1057.0 642 76.5
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 1.3e-306 1055.8 653 74.4
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 1.1e-305 1052.7 650 75.2
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 1.1e-305 1052.7 651 74.0
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 1.9e-305 1052.0 645 75.5
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.3e-305 1050.8 653 74.0
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 2.8e-304 1048.1 644 75.9
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 3.6e-304 1047.7 641 74.6
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 1.4e-303 1045.8 652 73.0
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 3.1e-303 1044.6 645 75.2
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 7.5e-302 1040.0 669 71.7
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 1.2e-299 1032.7 601 78.0
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 3.5e-299 1031.2 650 71.7
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.5e-299 1031.2 650 72.5
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.4e-295 1019.2 643 73.6
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 5.2e-295 1017.3 651 71.9
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 8.9e-295 1016.5 653 71.2
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.6e-294 1015.0 649 73.0
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 3.4e-294 1014.6 643 73.1
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 5.8e-294 1013.8 651 72.0
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 7.6e-294 1013.4 645 72.4
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 9.9e-294 1013.1 649 72.1
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 6.4e-293 1010.4 649 72.3
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 8.4e-293 1010.0 649 72.3
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 7.1e-292 1006.9 805 61.6
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 7.3e-289 996.9 649 71.8
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 7.3e-289 996.9 649 71.8
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 7.3e-289 996.9 649 71.8
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 2.0e-286 988.8 650 70.3
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 4.6e-283 977.6 646 69.5
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 5.8e-278 960.7 651 68.5
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 4.9e-277 957.6 650 68.9
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 4.6e-275 951.0 606 73.1
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 5.6e-273 944.1 647 68.5
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.0e-266 923.3 636 68.9
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 6.7e-266 920.6 565 74.7
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 3.2e-260 901.7 601 69.4
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 4.2e-252 874.8 558 71.7
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 9.7e-249 863.6 582 68.4
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 4.2e-244 848.2 646 60.5
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 5.3e-239 831.2 645 60.8
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 2.3e-234 815.8 651 59.1
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 1.8e-210 736.5 513 69.0
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 4.3e-188 662.1 370 79.7
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 3.2e-175 619.4 371 79.8
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 5.8e-169 598.6 559 55.6
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 1.3e-168 597.4 379 76.3
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.1e-155 553.5 380 68.2
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 8.2e-139 498.4 543 48.4
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 6.5e-120 435.6 241 78.4
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 1.5e-79 301.6 747 31.1
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 9.8e-76 288.9 152 81.6
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 8.1e-70 269.2 250 58.0
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 9.3e-58 229.2 211 55.0
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.3e-27 129.0 72 83.3
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.2e-27 128.3 73 80.8
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 8.7e-24 116.3 77 63.6
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 7.4e-23 113.2 70 68.6
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 9.0e-21 106.3 71 63.4
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.0e-19 102.8 89 60.7
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 5.0e-19 100.5 70 62.9
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 4.2e-18 97.4 66 71.2
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 4.2e-18 97.4 66 71.2
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 4.2e-18 97.4 66 71.2
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 2.1e-17 95.1 83 56.6
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 1.4e-16 92.4 71 59.2
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 2.2e-14 85.1 107 45.8
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.4e-13 82.4 52 65.4
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 5.0e-11 73.9 99 44.4
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 5.1e-08 63.9 69 47.8
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 5.7e-07 60.5 64 48.4


User provided reference genes

Program Settings