Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.5e-249 863.6 437 100.0
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.1e-199 699.1 427 85.9
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 3.1e-198 695.3 475 78.9
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 4.0e-198 694.9 437 82.2
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.2e-197 693.3 475 78.5
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 6.4e-196 687.6 475 78.1
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.4e-195 686.4 437 81.7
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 3.3e-192 675.2 437 79.9
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 2.8e-191 672.2 440 79.3
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 2.0e-189 666.0 437 78.7
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 5.8e-189 664.5 475 74.5
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 2.9e-188 662.1 437 78.0
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 3.7e-188 661.8 475 74.3
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 6.0e-186 654.4 475 73.3
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 1.1e-184 650.2 443 75.6
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.5e-184 649.8 476 72.5
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.5e-184 649.8 424 79.2
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 3.3e-184 648.7 475 73.1
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 1.6e-183 646.4 475 72.2
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 2.1e-183 646.0 472 72.9
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 4.7e-183 644.8 475 73.5
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 1.1e-182 643.7 475 72.4
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.1e-182 643.7 475 72.6
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.4e-182 643.3 475 72.6
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 2.3e-182 642.5 475 71.4
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 4.0e-182 641.7 475 72.4
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 1.2e-181 640.2 475 71.8
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.5e-181 639.8 475 72.4
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.0e-181 639.4 472 72.0
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 2.0e-181 639.4 475 70.5
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 3.4e-181 638.6 474 71.1
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 4.4e-181 638.3 475 71.2
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 7.5e-181 637.5 472 71.8
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 7.5e-181 637.5 475 70.7
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 9.9e-181 637.1 475 70.7
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.7e-180 636.3 475 71.4
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.7e-180 636.3 474 71.3
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-180 636.0 474 71.1
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 3.7e-180 635.2 475 71.4
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.9e-180 634.8 474 71.1
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 4.9e-180 634.8 475 71.6
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 6.4e-180 634.4 475 70.5
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.3e-180 634.0 474 71.1
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 1.4e-179 633.3 475 70.9
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 1.9e-179 632.9 475 70.7
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 5.4e-179 631.3 475 70.9
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 7.1e-179 630.9 475 70.7
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.6e-178 629.8 476 70.4
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 1.6e-178 629.8 475 70.1
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.1e-178 629.4 476 70.2
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 2.7e-178 629.0 475 70.5
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 3.5e-178 628.6 475 70.9
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 3.5e-178 628.6 475 70.5
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 3.5e-178 628.6 475 70.5
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 6.0e-178 627.9 475 71.4
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 1.0e-177 627.1 475 70.9
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 2.3e-177 625.9 475 70.3
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 3.0e-177 625.5 467 71.5
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 3.0e-177 625.5 475 70.3
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 8.6e-177 624.0 474 70.3
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 1.5e-176 623.2 475 70.3
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 1.9e-176 622.9 475 70.7
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.9e-176 622.9 475 69.5
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 4.3e-176 621.7 475 69.9
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 5.6e-176 621.3 475 72.2
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 7.3e-176 620.9 471 70.3
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 7.3e-176 620.9 475 69.7
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 3.6e-175 618.6 475 70.3
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 3.6e-175 618.6 475 70.3
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 3.6e-175 618.6 475 70.3
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 3.6e-175 618.6 475 70.3
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 3.6e-175 618.6 499 67.9
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.7e-175 618.2 464 71.1
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 6.2e-175 617.8 475 70.5
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 6.2e-175 617.8 475 70.9
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 8.1e-175 617.5 475 70.7
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 8.1e-175 617.5 473 69.6
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.1e-174 617.1 475 70.7
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 1.1e-174 617.1 475 70.3
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 1.1e-174 617.1 475 70.7
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.1e-174 617.1 475 69.7
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 1.4e-174 616.7 475 70.1
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.4e-174 616.7 475 68.8
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 1.8e-174 616.3 488 67.8
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 1.8e-174 616.3 475 70.1
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 2.4e-174 615.9 471 69.4
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 2.4e-174 615.9 475 69.1
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 3.1e-174 615.5 475 69.9
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 1.2e-173 613.6 475 69.7
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 1.5e-173 613.2 423 76.1
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.3e-172 610.1 470 70.0
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 2.9e-172 609.0 470 70.0
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.9e-172 609.0 471 69.0
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 4.9e-172 608.2 472 68.2
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 3.2e-171 605.5 465 69.5
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 4.2e-171 605.1 427 75.9
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 7.1e-171 604.4 521 65.1
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 9.2e-171 604.0 475 67.2
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 2.1e-170 602.8 463 71.3
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 2.7e-170 602.4 465 70.1
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 7.8e-170 600.9 474 67.1
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 1.0e-169 600.5 464 67.2
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 3.9e-169 598.6 474 67.5
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 1.2e-167 593.6 475 66.3
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.1e-166 589.0 475 65.5
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 4.0e-166 588.6 475 65.9
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.5e-165 586.6 434 70.7
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 1.9e-163 579.7 449 69.3
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 7.8e-162 574.3 472 65.3
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 3.0e-161 572.4 472 65.0
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 5.6e-160 568.2 636 54.4
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 1.6e-159 566.6 472 63.3
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 8.1e-159 564.3 459 67.1
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.2e-157 560.5 469 64.0
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.6e-154 550.1 473 61.5
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 5.1e-153 545.0 473 61.1
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 1.6e-151 540.0 473 61.7
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.7e-151 538.9 466 63.5
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 6.2e-151 538.1 473 60.5
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 3.4e-149 532.3 472 60.6
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.0e-148 530.8 472 63.3
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.9e-146 521.2 462 61.0
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.8e-145 520.0 456 61.4
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 3.9e-145 518.8 394 71.1
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 5.1e-145 518.5 475 57.7
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-144 516.5 466 59.9
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 1.9e-144 516.5 403 68.0
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 1.2e-141 507.3 460 60.4
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.5e-141 506.9 460 59.8
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 3.4e-141 505.8 341 75.1
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 3.4e-141 505.8 340 76.2
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 2.9e-140 502.7 390 69.7
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 3.2e-139 499.2 341 76.0
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 9.3e-139 497.7 480 57.7
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.2e-138 497.3 403 65.5
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-136 490.0 463 59.4
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-132 477.2 453 56.7
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.5e-128 463.8 461 52.5
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.8e-124 449.1 449 56.1
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 6.7e-121 438.3 362 66.0
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-119 433.3 435 56.8
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 1.1e-112 411.0 473 49.5
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 6.1e-106 388.7 485 47.0
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.8e-105 387.1 483 48.7
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.2e-103 380.2 331 64.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 6.5e-100 368.6 336 60.7
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 1.1e-99 367.9 397 53.7
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 5.0e-92 342.4 490 44.7
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.8e-89 334.0 481 41.8
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 2.9e-84 316.6 287 63.8
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.9e-83 313.9 199 79.9
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 6.6e-76 288.9 487 39.2
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 5.8e-72 275.8 168 79.8
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 3.7e-71 273.1 155 83.2
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.7e-68 264.2 264 56.8
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 3.3e-67 260.0 166 78.9
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 7.6e-64 248.8 444 36.5
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 1.5e-59 234.6 185 67.0
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.8e-57 227.6 278 51.4
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 9.9e-56 221.9 134 80.6
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 1.7e-52 211.1 175 65.7
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 2.7e-37 160.6 119 70.6
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 7.6e-32 142.5 87 80.5
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 7.1e-30 136.0 98 71.4
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 3.0e-28 130.6 219 38.4
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 9.0e-25 119.0 165 47.9
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 1.9e-19 101.3 127 44.1
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 3.7e-18 97.1 69 71.0
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 1.3e-15 88.6 127 42.5
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 1.7e-15 88.2 47 91.5
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.2e-14 84.0 60 70.0
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 3.9e-12 77.0 49 77.6
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 8.2e-10 69.3 74 51.4
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 8.2e-10 69.3 74 51.4
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 3.1e-09 67.4 46 67.4
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 9.1e-09 65.9 32 87.5
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 2.0e-08 64.7 49 63.3
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 7.7e-08 62.8 35 77.1
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 1.7e-07 61.6 30 90.0
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 1.1e-06 58.9 44 61.4
HanXRQChr04g0097131 Helianthus annuus HOM05D009775 ORTHO05D219867 5.5e-06 56.6 65 46.2


User provided reference genes

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